About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_001007-T1RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN
OS493_001008-T114-3-3 PROTEIN
OS493_001009-T114-3-3 PROTEIN
OS493_001010-T1RNA HELICASE
OS493_001011-T114-3-3 PROTEIN
OS493_001012-T160S RIBOSOMAL PROTEIN L6
OS493_001013-T1COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL
OS493_001014-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_001015-T1RH14732P
OS493_001016-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_001017-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_001018-T1-
OS493_001019-T1-
OS493_001020-T1PR DOMAIN ZINC FINGER PROTEIN
OS493_001023-T1VACUOLAR SORTING PROTEIN 53
OS493_001024-T1-
OS493_001025-T1GAMMA GLUTAMYL TRANSPEPTIDASE
OS493_001026-T1LYSOSOMAL ACID LIPASE-RELATED
OS493_001027-T1LYSOSOMAL ACID LIPASE-RELATED
OS493_001028-T1LYSOSOMAL ACID LIPASE-RELATED
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