Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_002740-T1 | |
OS493_002741-T1 | C1ORF189 |
OS493_002742-T1 | OS10G0105400 PROTEIN |
OS493_002743-T1 | |
OS493_002744-T1 | OLFACTOMEDIN-RELATED |
OS493_002745-T1 | OLFACTOMEDIN-RELATED |
OS493_002746-T1 | OLFACTOMEDIN-RELATED |
OS493_002747-T1 | OLFACTOMEDIN-RELATED |
OS493_002748-T1 | ARGININE/SERINE-RICH PROTEIN PNISR |
OS493_002749-T1 | |
OS493_002750-T1 | SPERMINE SYNTHASE |
OS493_002751-T1 | SPERMINE SYNTHASE |
OS493_002752-T1 | SPERMINE SYNTHASE |
OS493_002753-T1 | |
OS493_002754-T1 | DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED |
OS493_002755-T1 | DNA POLYMERASE I |
OS493_002756-T1 | DNA POLYMERASE I |
OS493_002757-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_002758-T1 | GROWTH AND TRANSFORMATION-DEPENDENT PROTEIN |
OS493_002759-T1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
OS493_002760-T1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
OS493_002761-T1 | ALPHA- 1,6 -FUCOSYLTRANSFERASE |
OS493_002763-T1 | PROTEIN MAX MYC-ASSOCIATED FACTOR X |
OS493_002764-T1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED |
OS493_002765-T1 | |
OS493_002766-T1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN C |
OS493_002767-T1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN C |
OS493_002768-T1 | |
OS493_002769-T1 | - |
OS493_002770-T1 | - |
OS493_002771-T1 | - |
OS493_002772-T1 | HISTONE-LYSINE N-METHYLTRANSFERASE SETD2 |
OS493_002773-T1 | |
OS493_002774-T1 | CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED |
OS493_002775-T1 | SECRETED MODULAR CALCIUM-BINDING PROTEIN |
OS493_002776-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 4 |
OS493_002777-T1 | LUNG SEVEN TRANSMEMBRANE RECEPTOR |
OS493_002778-T1 | LUNG SEVEN TRANSMEMBRANE RECEPTOR |
OS493_002779-T1 | |
OS493_002780-T1 | - |
OS493_002781-T1 | - |
OS493_002782-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 |
OS493_002783-T1 | CNH DOMAIN CONTAINING |
OS493_002784-T1 | HOMEOBOX PROTEIN NKX |
OS493_002785-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_002786-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_002787-T1 | SYNAPTOSOMAL ASSOCIATED PROTEIN |
OS493_002788-T1 | HOMEO BOX HB9 LIKE A-RELATED |
OS493_002789-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 7 |
OS493_002790-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |