Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_002686-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
OS493_002687-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
OS493_002688-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
OS493_002689-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_002690-T1 | ANGIOGENIC FACTOR WITH G PATCH AND FHA DOMAINS 1 |
OS493_002691-T1 | COILIN |
OS493_002692-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_002693-T1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
OS493_002694-T1 | MYB-BINDING PROTEIN 1A FAMILY MEMBER |
OS493_002695-T1 | MYB-BINDING PROTEIN 1A FAMILY MEMBER |
OS493_002696-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
OS493_002697-T1 | MUCIN 4-RELATED |
OS493_002698-T1 | ALPHA-TECTORIN-RELATED |
OS493_002700-T1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 15 |
OS493_002701-T1 | |
OS493_002702-T1 | LIPOXYGENASE |
OS493_002703-T1 | |
OS493_002704-T1 | |
OS493_002705-T1 | |
OS493_002706-T1 | OS10G0105400 PROTEIN |
OS493_002707-T1 | OS10G0105400 PROTEIN |
OS493_002708-T1 | OS10G0105400 PROTEIN |
OS493_002709-T1 | |
OS493_002710-T1 | NACHT DOMAIN-CONTAINING PROTEIN |
OS493_002713-T1 | OTU DOMAIN CONTAINING PROTEIN |
OS493_002714-T1 | OS10G0105400 PROTEIN |
OS493_002715-T1 | OS10G0105400 PROTEIN |
OS493_002716-T1 | OS10G0105400 PROTEIN |
OS493_002717-T1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
OS493_002718-T1 | |
OS493_002719-T1 | |
OS493_002721-T1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
OS493_002722-T1 | UNCHARACTERIZED |
OS493_002723-T1 | OS10G0105400 PROTEIN |
OS493_002724-T1 | OS10G0105400 PROTEIN |
OS493_002725-T1 | OS10G0105400 PROTEIN |
OS493_002726-T1 | OS10G0105400 PROTEIN |
OS493_002727-T1 | OS10G0105400 PROTEIN |
OS493_002728-T1 | BLOM7 |
OS493_002729-T1 | WDR41-RELATED |
OS493_002730-T1 | |
OS493_002731-T1 | |
OS493_002732-T1 | NADH-UBIQUINONE OXIDOREDUCTASE |
OS493_002733-T1 | OLFACTOMEDIN-RELATED |
OS493_002734-T1 | |
OS493_002735-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
OS493_002736-T1 | URACIL-DNA GLYCOSYLASE |
OS493_002737-T1 | URACIL-DNA GLYCOSYLASE |
OS493_002738-T1 | URACIL-DNA GLYCOSYLASE |
OS493_002739-T1 | URACIL-DNA GLYCOSYLASE |