Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_002625-T1 | |
OS493_002629-T1 | |
OS493_002630-T1 | |
OS493_002631-T1 | SULFOTRANSFERASE DOMAIN-CONTAINING PROTEIN |
OS493_002632-T1 | TUBULIN POLYGLUTAMYLASE |
OS493_002633-T1 | |
OS493_002634-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_002635-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_002636-T1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
OS493_002637-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_002638-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_002639-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_002640-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_002641-T1 | RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN |
OS493_002642-T1 | TRANSLATION ELONGATION FACTOR-RELATED |
OS493_002643-T1 | TRANSLATION ELONGATION FACTOR-RELATED |
OS493_002644-T1 | PROTEASOME SUBUNIT ALPHA/BETA |
OS493_002645-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 115 |
OS493_002647-T1 | INTERFERON ALPHA-INDUCIBLE PROTEIN 27 |
OS493_002648-T1 | |
OS493_002649-T1 | OVOCHYMASE-RELATED |
OS493_002650-T1 | UNCHARACTERIZED |
OS493_002651-T1 | SEL-1-LIKE PROTEIN |
OS493_002652-T1 | |
OS493_002653-T1 | RNA POLYMERASE II-ASSOCIATED PROTEIN 3 |
OS493_002654-T1 | UNCHARACTERIZED |
OS493_002655-T1 | ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE |
OS493_002656-T1 | ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE |
OS493_002657-T1 | FRUCTOSE-1,6-BISPHOSPHATASE-RELATED |
OS493_002659-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
OS493_002660-T1 | |
OS493_002665-T1 | CUBILIN-LIKE PROTEIN |
OS493_002666-T1 | |
OS493_002667-T1 | RE54151P |
OS493_002668-T1 | |
OS493_002669-T1 | |
OS493_002670-T1 | |
OS493_002671-T1 | |
OS493_002672-T1 | |
OS493_002673-T1 | |
OS493_002675-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
OS493_002676-T1 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
OS493_002677-T1 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
OS493_002678-T1 | PHOSPHATIDYLINOSITOL GLYCAN |
OS493_002679-T1 | M7GPPPN-MRNA HYDROLASE |
OS493_002680-T1 | |
OS493_002681-T1 | |
OS493_002682-T1 | |
OS493_002683-T1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
OS493_002685-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |