About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002625-T1
OS493_002629-T1
OS493_002630-T1
OS493_002631-T1SULFOTRANSFERASE DOMAIN-CONTAINING PROTEIN
OS493_002632-T1TUBULIN POLYGLUTAMYLASE
OS493_002633-T1
OS493_002634-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_002635-T1MACPF DOMAIN-CONTAINING PROTEIN
OS493_002636-T1THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
OS493_002637-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
OS493_002638-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
OS493_002639-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
OS493_002640-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
OS493_002641-T1RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN
OS493_002642-T1TRANSLATION ELONGATION FACTOR-RELATED
OS493_002643-T1TRANSLATION ELONGATION FACTOR-RELATED
OS493_002644-T1PROTEASOME SUBUNIT ALPHA/BETA
OS493_002645-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 115
OS493_002647-T1INTERFERON ALPHA-INDUCIBLE PROTEIN 27
OS493_002648-T1
OS493_002649-T1OVOCHYMASE-RELATED
OS493_002650-T1UNCHARACTERIZED
OS493_002651-T1SEL-1-LIKE PROTEIN
OS493_002652-T1
OS493_002653-T1RNA POLYMERASE II-ASSOCIATED PROTEIN 3
OS493_002654-T1UNCHARACTERIZED
OS493_002655-T1ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE
OS493_002656-T1ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE
OS493_002657-T1FRUCTOSE-1,6-BISPHOSPHATASE-RELATED
OS493_002659-T1COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
OS493_002660-T1
OS493_002665-T1CUBILIN-LIKE PROTEIN
OS493_002666-T1
OS493_002667-T1RE54151P
OS493_002668-T1
OS493_002669-T1
OS493_002670-T1
OS493_002671-T1
OS493_002672-T1
OS493_002673-T1
OS493_002675-T1COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
OS493_002676-T1GM2 GANGLIOSIDE ACTIVATOR PROTEIN
OS493_002677-T1GM2 GANGLIOSIDE ACTIVATOR PROTEIN
OS493_002678-T1PHOSPHATIDYLINOSITOL GLYCAN
OS493_002679-T1M7GPPPN-MRNA HYDROLASE
OS493_002680-T1
OS493_002681-T1
OS493_002682-T1
OS493_002683-T1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
OS493_002685-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
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