About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002300-T1GNAT FAMILY N-ACETYLTRANSFERASE
OS493_002301-T1
OS493_002302-T1SLR5058 PROTEIN
OS493_002304-T1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
OS493_002305-T1
OS493_002306-T1
OS493_002308-T1
OS493_002310-T1
OS493_002311-T1PARVIN
OS493_002312-T1G PROTEIN-COUPLED RECEPTOR
OS493_002313-T1OPSIN
OS493_002315-T1MULTICOPPER OXIDASE-RELATED
OS493_002316-T1
OS493_002319-T1G PROTEIN-COUPLED RECEPTOR
OS493_002320-T1G PROTEIN-COUPLED RECEPTOR
OS493_002321-T1OPSIN
OS493_002322-T1OPSIN
OS493_002323-T1GNAT FAMILY N-ACETYLTRANSFERASE
OS493_002324-T1GNAT FAMILY N-ACETYLTRANSFERASE
OS493_002325-T1SLL0310 PROTEIN
OS493_002326-T1BIOTINIDASE-RELATED
OS493_002327-T1EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C
OS493_002328-T1EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C
OS493_002329-T1EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C
OS493_002330-T1PUTATIVE HOMEODOMAIN TRANSCRIPTION FACTOR PHTF
OS493_002331-T1NOTCH LIGAND FAMILY MEMBER
OS493_002332-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_002333-T1
OS493_002334-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
OS493_002335-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
OS493_002336-T1
OS493_002337-T1
OS493_002338-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_002339-T1
OS493_002340-T1NOTCH LIGAND FAMILY MEMBER
OS493_002341-T1
OS493_002342-T1CRUMBS FAMILY MEMBER
OS493_002344-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_002345-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_002346-T1
OS493_002350-T1CRUMBS FAMILY MEMBER
OS493_002351-T1
OS493_002352-T1
OS493_002353-T1
OS493_002354-T1
OS493_002355-T1
OS493_002356-T1
OS493_002357-T1
OS493_002358-T1NADH DEHYDROGENASE
OS493_002359-T1AGAP008221-PA
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