Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_002897-T1 | MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED |
OS493_002898-T1 | |
OS493_002899-T1 | RP42 RELATED |
OS493_002900-T1 | PROTEIN PHOSPHATASE 2C |
OS493_002901-T1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
OS493_002902-T1 | CINGULIN-LIKE PROTEIN 1-RELATED |
OS493_002903-T1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
OS493_002904-T1 | B9 DOMAIN-CONTAINING |
OS493_002905-T1 | IFT140/172-RELATED |
OS493_002906-T1 | BRCA1-ASSOCIATED ATM ACTIVATOR 1 |
OS493_002907-T1 | AGAP008170-PA |
OS493_002908-T1 | VILLIN |
OS493_002909-T1 | PROTEIN ENHANCER OF SEVENLESS 2B |
OS493_002910-T1 | NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED |
OS493_002912-T1 | NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED |
OS493_002913-T1 | NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED |
OS493_002914-T1 | NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED |
OS493_002915-T1 | POLYCOMB GROUP PROTEIN |
OS493_002916-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
OS493_002917-T1 | PROTEIN ENHANCER OF SEVENLESS 2B |
OS493_002918-T1 | PROTEIN ENHANCER OF SEVENLESS 2B |
OS493_002919-T1 | PROTEIN ENHANCER OF SEVENLESS 2B |
OS493_002920-T1 | |
OS493_002922-T1 | |
OS493_002923-T1 | |
OS493_002924-T1 | MAHOGUNIN |
OS493_002925-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 40 |
OS493_002926-T1 | EPHRIN TYPE-B RECEPTOR |
OS493_002927-T1 | |
OS493_002928-T1 | |
OS493_002929-T1 | EPHRIN TYPE-B RECEPTOR |
OS493_002930-T1 | EPHRIN TYPE-B RECEPTOR |
OS493_002931-T1 | EPHRIN TYPE-B RECEPTOR |
OS493_002932-T1 | EPHRIN TYPE-B RECEPTOR |
OS493_002933-T1 | EPHRIN TYPE-B RECEPTOR |
OS493_002934-T1 | EPHRIN TYPE-B RECEPTOR |
OS493_002935-T1 | |
OS493_002936-T1 | EPHRIN TYPE-B RECEPTOR |
OS493_002937-T1 | EPHRIN TYPE-B RECEPTOR |
OS493_002938-T1 | TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE |
OS493_002939-T1 | TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE |
OS493_002940-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_002941-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_002942-T1 | NOTCH LIGAND FAMILY MEMBER |
OS493_002943-T1 | PROTEIN HID1 |
OS493_002944-T1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
OS493_002946-T1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
OS493_002947-T1 | |
OS493_002948-T1 | THO COMPLEX SUBUNIT 6 HOMOLOG |
OS493_002949-T1 | POLYCYSTIN FAMILY MEMBER |