About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002897-T1MYOCARDIN-RELATED TRANSCRIPTION FACTOR-RELATED
OS493_002898-T1
OS493_002899-T1RP42 RELATED
OS493_002900-T1PROTEIN PHOSPHATASE 2C
OS493_002901-T1MYOSIN HEAVY CHAIN, NON-MUSCLE
OS493_002902-T1CINGULIN-LIKE PROTEIN 1-RELATED
OS493_002903-T1RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
OS493_002904-T1B9 DOMAIN-CONTAINING
OS493_002905-T1IFT140/172-RELATED
OS493_002906-T1BRCA1-ASSOCIATED ATM ACTIVATOR 1
OS493_002907-T1AGAP008170-PA
OS493_002908-T1VILLIN
OS493_002909-T1PROTEIN ENHANCER OF SEVENLESS 2B
OS493_002910-T1NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED
OS493_002912-T1NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED
OS493_002913-T1NADP-SPECIFIC GLUTAMATE DEHYDROGENASE 1-RELATED
OS493_002914-T1NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED
OS493_002915-T1POLYCOMB GROUP PROTEIN
OS493_002916-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_002917-T1PROTEIN ENHANCER OF SEVENLESS 2B
OS493_002918-T1PROTEIN ENHANCER OF SEVENLESS 2B
OS493_002919-T1PROTEIN ENHANCER OF SEVENLESS 2B
OS493_002920-T1
OS493_002922-T1
OS493_002923-T1
OS493_002924-T1MAHOGUNIN
OS493_002925-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 40
OS493_002926-T1EPHRIN TYPE-B RECEPTOR
OS493_002927-T1
OS493_002928-T1
OS493_002929-T1EPHRIN TYPE-B RECEPTOR
OS493_002930-T1EPHRIN TYPE-B RECEPTOR
OS493_002931-T1EPHRIN TYPE-B RECEPTOR
OS493_002932-T1EPHRIN TYPE-B RECEPTOR
OS493_002933-T1EPHRIN TYPE-B RECEPTOR
OS493_002934-T1EPHRIN TYPE-B RECEPTOR
OS493_002935-T1
OS493_002936-T1EPHRIN TYPE-B RECEPTOR
OS493_002937-T1EPHRIN TYPE-B RECEPTOR
OS493_002938-T1TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
OS493_002939-T1TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
OS493_002940-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_002941-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_002942-T1NOTCH LIGAND FAMILY MEMBER
OS493_002943-T1PROTEIN HID1
OS493_002944-T1TANDEM PH DOMAIN CONTAINING PROTEIN
OS493_002946-T1ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
OS493_002947-T1
OS493_002948-T1THO COMPLEX SUBUNIT 6 HOMOLOG
OS493_002949-T1POLYCYSTIN FAMILY MEMBER
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