Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_002950-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_002951-T1 | POLYCYSTIN-1 |
OS493_002952-T1 | |
OS493_002953-T1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
OS493_002954-T1 | |
OS493_002955-T1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
OS493_002956-T1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED |
OS493_002957-T1 | SPERIOLIN-BINDING FACTOR |
OS493_002958-T1 | SPERIOLIN-BINDING FACTOR |
OS493_002959-T1 | SPERIOLIN-BINDING FACTOR |
OS493_002960-T1 | ADP RIBOSYLATION FACTOR-RELATED |
OS493_002961-T1 | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE |
OS493_002962-T1 | COENZYME Q10 BIOSYNTHESIS PROTEIN 7 |
OS493_002963-T1 | |
OS493_002964-T1 | CENTROMERE PROTEIN X |
OS493_002965-T1 | ZINC FINGER PROTEIN 207 |
OS493_002966-T1 | CGTHBA PROTEIN -14 GENE PROTEIN |
OS493_002967-T1 | |
OS493_002968-T1 | |
OS493_002969-T1 | |
OS493_002970-T1 | E3 UBIQUITIN-PROTEIN LIGASE CHIP |
OS493_002971-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_002972-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_002973-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_002974-T1 | CENTROCORTIN FAMILY MEMBER |
OS493_002975-T1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
OS493_002976-T1 | 39S RIBOSOMAL PROTEIN L12 |
OS493_002977-T1 | UPF0472 PROTEIN C16ORF72 |
OS493_002978-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
OS493_002979-T1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
OS493_002980-T1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
OS493_002981-T1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
OS493_002982-T1 | TRANSLATION FACTOR |
OS493_002983-T1 | XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED |
OS493_002984-T1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
OS493_002985-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_002986-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_002987-T1 | |
OS493_002988-T1 | MATRIX METALLOPROTEINASE |
OS493_002989-T1 | MATRIX METALLOPROTEINASE |
OS493_002990-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_002991-T1 | PROTEIN SIDEKICK |
OS493_002992-T1 | PROTEIN SIDEKICK |
OS493_002993-T1 | TWEETY-RELATED |
OS493_002994-T1 | |
OS493_002995-T1 | |
OS493_002996-T1 | |
OS493_002997-T1 | TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54 |
OS493_002998-T1 | C2 DOMAIN-CONTAINING PROTEIN |
OS493_002999-T1 | CYTOSOLIC PHOSPHOLIPASE A2 |