About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003426-T1
OS493_003427-T1
OS493_003428-T1L 2 01289
OS493_003429-T1UNCHARACTERIZED
OS493_003430-T1CD59 GLYCOPROTEIN
OS493_003431-T1DILUTE DOMAIN-CONTAINING PROTEIN YPR089W
OS493_003432-T1MYOSIN
OS493_003433-T1MYOSIN
OS493_003434-T1MYOSIN
OS493_003435-T1UNCHARACTERIZED
OS493_003436-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_003437-T1
OS493_003438-T1CENTROSOMAL PROTEIN POC5
OS493_003439-T1CENTROSOMAL PROTEIN POC5
OS493_003440-T1
OS493_003441-T1
OS493_003442-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_003443-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_003444-T1
OS493_003445-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_003446-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_003448-T1
OS493_003449-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_003450-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_003451-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_003452-T1
OS493_003453-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_003454-T1
OS493_003455-T1FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN
OS493_003457-T1RABCONNECTIN-3B, ISOFORM A
OS493_003458-T1RABCONNECTIN-3B, ISOFORM A
OS493_003459-T1
OS493_003461-T1RABCONNECTIN-3B, ISOFORM A
OS493_003462-T1THIOREDOXIN-LIKE PROTEIN 1
OS493_003463-T1PROTEIN EVA-1
OS493_003465-T1PROTEIN EVA-1
OS493_003466-T1
OS493_003467-T1
OS493_003468-T1
OS493_003470-T1PROTEIN EVA-1
OS493_003471-T1PROTEIN EVA-1
OS493_003472-T1
OS493_003475-T1
OS493_003476-T1
OS493_003477-T1ADAPTIN, ALPHA/GAMMA/EPSILON
OS493_003478-T1ADAPTIN, ALPHA/GAMMA/EPSILON
OS493_003479-T1
OS493_003480-T1PROTEIN CBG23806
OS493_003481-T1COMPLEXIN
OS493_003482-T1TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
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