About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003270-T1POLYCYSTIN FAMILY MEMBER
OS493_003273-T1
OS493_003274-T1MUCIN 12EA-RELATED
OS493_003275-T1POLYCYSTIN-1
OS493_003276-T1POLYCYSTIN FAMILY MEMBER
OS493_003277-T1
OS493_003278-T1
OS493_003279-T1
OS493_003280-T1CD59 GLYCOPROTEIN
OS493_003281-T1
OS493_003282-T1FLAVIN MONOAMINE OXIDASE
OS493_003283-T1
OS493_003284-T1CD59 GLYCOPROTEIN
OS493_003285-T1
OS493_003286-T1TRNA-DIHYDROURIDINE SYNTHASE
OS493_003287-T1RNA AND EXPORT FACTOR BINDING PROTEIN
OS493_003288-T1
OS493_003289-T1RNA-DEPENDENT RNA POLYMERASE
OS493_003290-T1
OS493_003291-T1
OS493_003292-T1CHROMATIN TARGET OF PRMT1 PROTEIN
OS493_003294-T1CD59 GLYCOPROTEIN
OS493_003295-T1VESICULAR MANNOSE-BINDING LECTIN
OS493_003296-T1ROPPORIN-1-LIKE PROTEIN
OS493_003297-T1TETRATRICOPEPTIDE REPEAT PROTEIN 23
OS493_003298-T1TETRATRICOPEPTIDE REPEAT PROTEIN 23
OS493_003299-T1-
OS493_003300-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_003301-T1
OS493_003302-T1
OS493_003303-T1CD59 GLYCOPROTEIN
OS493_003304-T1
OS493_003305-T1
OS493_003306-T1TELO2-INTERACTING PROTEIN 2
OS493_003307-T1
OS493_003308-T1
OS493_003309-T1ACROSIN-RELATED
OS493_003310-T1
OS493_003311-T1TRYPSIN-RELATED
OS493_003312-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_003313-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_003314-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_003315-T1
OS493_003316-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_003317-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_003318-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_003319-T1
OS493_003320-T1
OS493_003321-T1RNA-DEPENDENT RNA POLYMERASE
OS493_003322-T1RNA-DEPENDENT RNA POLYMERASE
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