Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_003270-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_003273-T1 | |
OS493_003274-T1 | MUCIN 12EA-RELATED |
OS493_003275-T1 | POLYCYSTIN-1 |
OS493_003276-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_003277-T1 | |
OS493_003278-T1 | |
OS493_003279-T1 | |
OS493_003280-T1 | CD59 GLYCOPROTEIN |
OS493_003281-T1 | |
OS493_003282-T1 | FLAVIN MONOAMINE OXIDASE |
OS493_003283-T1 | |
OS493_003284-T1 | CD59 GLYCOPROTEIN |
OS493_003285-T1 | |
OS493_003286-T1 | TRNA-DIHYDROURIDINE SYNTHASE |
OS493_003287-T1 | RNA AND EXPORT FACTOR BINDING PROTEIN |
OS493_003288-T1 | |
OS493_003289-T1 | RNA-DEPENDENT RNA POLYMERASE |
OS493_003290-T1 | |
OS493_003291-T1 | |
OS493_003292-T1 | CHROMATIN TARGET OF PRMT1 PROTEIN |
OS493_003294-T1 | CD59 GLYCOPROTEIN |
OS493_003295-T1 | VESICULAR MANNOSE-BINDING LECTIN |
OS493_003296-T1 | ROPPORIN-1-LIKE PROTEIN |
OS493_003297-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 23 |
OS493_003298-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 23 |
OS493_003299-T1 | - |
OS493_003300-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_003301-T1 | |
OS493_003302-T1 | |
OS493_003303-T1 | CD59 GLYCOPROTEIN |
OS493_003304-T1 | |
OS493_003305-T1 | |
OS493_003306-T1 | TELO2-INTERACTING PROTEIN 2 |
OS493_003307-T1 | |
OS493_003308-T1 | |
OS493_003309-T1 | ACROSIN-RELATED |
OS493_003310-T1 | |
OS493_003311-T1 | TRYPSIN-RELATED |
OS493_003312-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_003313-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_003314-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
OS493_003315-T1 | |
OS493_003316-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
OS493_003317-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
OS493_003318-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
OS493_003319-T1 | |
OS493_003320-T1 | |
OS493_003321-T1 | RNA-DEPENDENT RNA POLYMERASE |
OS493_003322-T1 | RNA-DEPENDENT RNA POLYMERASE |