About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003323-T1RNA-DEPENDENT RNA POLYMERASE
OS493_003324-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_003325-T1LITHOSTATHINE
OS493_003326-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_003327-T13-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE
OS493_003329-T13-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE
OS493_003330-T1PROTEASE M1 ZINC METALLOPROTEASE
OS493_003331-T1-
OS493_003332-T1
OS493_003333-T1
OS493_003334-T1CENTROSOMAL PROTEIN POC5
OS493_003335-T1
OS493_003336-T1
OS493_003337-T1CENTROSOMAL PROTEIN POC5
OS493_003338-T1
OS493_003339-T1
OS493_003340-T1KREMEN PROTEIN
OS493_003342-T1
OS493_003343-T1LIPOXYGENASE
OS493_003344-T1
OS493_003345-T1COLLAGEN ALPHA
OS493_003346-T1SI:CH211-266K2.1
OS493_003347-T1SI:CH211-266K2.1
OS493_003348-T1E3 UBIQUITIN-PROTEIN LIGASE RNF180
OS493_003349-T1UNCHARACTERIZED
OS493_003350-T1
OS493_003351-T1
OS493_003352-T1PROTEIN HINDERIN
OS493_003353-T1CD59 GLYCOPROTEIN
OS493_003354-T1
OS493_003355-T1CD59 GLYCOPROTEIN
OS493_003356-T1
OS493_003357-T1CD59 GLYCOPROTEIN
OS493_003358-T1
OS493_003359-T1HEPATOMA-DERIVED GROWTH FACTOR-RELATED
OS493_003360-T1LD44762P
OS493_003361-T1GUANINE DEAMINASE
OS493_003362-T1CYCLIN
OS493_003363-T1CARBON CATABOLITE REPRESSOR PROTEIN 4
OS493_003364-T1CARBON CATABOLITE REPRESSOR PROTEIN 4
OS493_003365-T1
OS493_003366-T1RADIAL SPOKE HEAD 1 HOMOLOG
OS493_003367-T1
OS493_003368-T1RADIAL SPOKE HEAD 1 HOMOLOG
OS493_003370-T1FACIOGENITAL DYSPLASIA PROTEIN
OS493_003371-T1
OS493_003372-T1
OS493_003373-T1PYRUVATE KINASE
OS493_003374-T1HOMEOBOX PROTEIN EMX-RELATED
OS493_003375-T1GUANINE DEAMINASE
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