About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003690-T1PROTEIN SIDEKICK
OS493_003691-T1
OS493_003692-T1PROTEIN FAM189A
OS493_003693-T1ACID PHOSPHATASE-RELATED
OS493_003694-T1PROTEIN SIDEKICK
OS493_003695-T1TIGHT JUNCTION PROTEIN
OS493_003696-T1TIGHT JUNCTION PROTEIN
OS493_003697-T1TROPOMODULIN
OS493_003698-T1CHONDROITIN SYNTHASE
OS493_003699-T1
OS493_003700-T1PROTEIN MAGO NASHI HOMOLOG
OS493_003701-T1
OS493_003702-T1E3 UBIQUITIN-PROTEIN LIGASE TTC3
OS493_003703-T1NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER
OS493_003704-T1
OS493_003705-T1TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2
OS493_003706-T1
OS493_003707-T1SERINE/THREONINE PROTEIN KINASE
OS493_003708-T1ECTOPIC P GRANULES PROTEIN 5 HOMOLOG
OS493_003709-T1ECTOPIC P GRANULES PROTEIN 5 HOMOLOG
OS493_003710-T1MESODERM DEVELOPMENT CANDIDATE 2
OS493_003711-T1
OS493_003712-T1GLR0591 PROTEIN
OS493_003713-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_003714-T1MUCIN 4-RELATED
OS493_003715-T1
OS493_003716-T1
OS493_003717-T1ECTOPIC P GRANULES PROTEIN 5 HOMOLOG
OS493_003718-T1
OS493_003719-T1MESODERM DEVELOPMENT CANDIDATE 2
OS493_003720-T1GLR0591 PROTEIN
OS493_003721-T1GLR0591 PROTEIN
OS493_003722-T1GLR0591 PROTEIN
OS493_003723-T1
OS493_003724-T1GLR0591 PROTEIN
OS493_003725-T1ECTOPIC P GRANULES PROTEIN 5 HOMOLOG
OS493_003726-T1
OS493_003727-T1MUCIN 4-RELATED
OS493_003728-T1MUCIN 4-RELATED
OS493_003729-T1
OS493_003730-T1
OS493_003731-T1
OS493_003732-T1
OS493_003733-T1
OS493_003734-T1-
OS493_003735-T1-
OS493_003736-T1MYCBP-ASSOCIATED PROTEIN
OS493_003738-T1SMAD
OS493_003739-T1RNA METHYLTRANSFERASE
OS493_003740-T1RNA METHYLTRANSFERASE
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