About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003741-T1RNA METHYLTRANSFERASE
OS493_003742-T1RNA METHYLTRANSFERASE
OS493_003743-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_003744-T1OPSIN
OS493_003745-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_003746-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_003747-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
OS493_003748-T1OVOCHYMASE-RELATED
OS493_003749-T1
OS493_003750-T1RAN GTPASE-ACTIVATING PROTEIN 1
OS493_003751-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_003753-T1
OS493_003754-T1MUCIN 4-RELATED
OS493_003755-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_003756-T1ALPHA-TECTORIN-RELATED
OS493_003758-T1OVOCHYMASE-RELATED
OS493_003759-T1
OS493_003760-T1
OS493_003761-T1OVOCHYMASE-RELATED
OS493_003762-T1
OS493_003763-T1
OS493_003764-T1ALPHA-GLUCOSIDASE
OS493_003765-T1ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
OS493_003766-T1ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
OS493_003767-T1
OS493_003768-T1PIKACHURIN-LIKE PROTEIN
OS493_003769-T1PIKACHURIN-LIKE PROTEIN
OS493_003770-T1TRANSCRIPTION COFACTOR VESTIGIAL-LIKE PROTEIN
OS493_003771-T1KINESIN-RELATED
OS493_003772-T1INTERLEUKIN ENHANCER-BINDING FACTOR
OS493_003773-T1
OS493_003774-T1
OS493_003775-T1
OS493_003776-T1
OS493_003777-T1SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN
OS493_003778-T1ORNITHINE DECARBOXYLASE ANTIZYME
OS493_003779-T1
OS493_003781-T1
OS493_003782-T1CHYMOTRYPSIN-RELATED
OS493_003783-T1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
OS493_003784-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_003785-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_003786-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_003788-T1
OS493_003789-T1TRYPSIN-RELATED
OS493_003790-T1-
OS493_003791-T1-
OS493_003792-T1WD REPEAT-CONTAINING PROTEIN 61
OS493_003793-T1
OS493_003794-T1UNCHARACTERIZED
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