Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_003901-T1 | |
OS493_003902-T1 | FRUCTOSAMINE 3 KINASE-RELATED PROTEIN |
OS493_003903-T1 | |
OS493_003904-T1 | FRUCTOSAMINE 3 KINASE-RELATED PROTEIN |
OS493_003905-T1 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
OS493_003906-T1 | |
OS493_003907-T1 | |
OS493_003908-T1 | UNCHARACTERIZED |
OS493_003909-T1 | |
OS493_003910-T1 | |
OS493_003911-T1 | SIGNAL PEPTIDE PEPTIDASE |
OS493_003912-T1 | FACT COMPLEX SUBUNIT SSRP1 |
OS493_003913-T1 | HIGH MOBILITY GROUP PROTEIN DSP1 |
OS493_003916-T1 | INTEGRAL MEMBRANE PROTEIN DGCR2/IDD |
OS493_003917-T1 | UBIQUITIN FUSION DEGRADATON PROTEIN 1 |
OS493_003919-T1 | ABHYDROLASE DOMAIN-CONTAINING PROTEIN |
OS493_003921-T1 | |
OS493_003922-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_003923-T1 | |
OS493_003924-T1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
OS493_003925-T1 | |
OS493_003926-T1 | TRANSMEMBRANE CHANNEL-RELATED |
OS493_003927-T1 | PHOSPHOGLYCERATE MUTASE-RELATED |
OS493_003928-T1 | |
OS493_003929-T1 | PTD012 PROTEIN |
OS493_003930-T1 | |
OS493_003931-T1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
OS493_003932-T1 | |
OS493_003933-T1 | UNCHARACTERIZED |
OS493_003934-T1 | PROLINE OXIDASE |
OS493_003935-T1 | GEMININ |
OS493_003936-T1 | |
OS493_003937-T1 | |
OS493_003938-T1 | |
OS493_003939-T1 | |
OS493_003940-T1 | SYNTAXIN |
OS493_003941-T1 | |
OS493_003942-T1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
OS493_003943-T1 | UBIQUITIN-ACTIVATING ENZYME E1 |
OS493_003944-T1 | SOLUTE CARRIER FAMILY 35 MEMBER B |
OS493_003945-T1 | DUF614 FAMILY PROTEIN-RELATED |
OS493_003946-T1 | |
OS493_003947-T1 | UREASE ACCESSORY PROTEIN F |
OS493_003948-T1 | |
OS493_003949-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_003950-T1 | |
OS493_003951-T1 | PROLACTIN REGULATORY ELEMENT BINDING PROTEIN |
OS493_003952-T1 | |
OS493_003953-T1 | |
OS493_003954-T1 | SEVEN TRANSMEMBRANE PROTEIN 1-RELATED |