About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003901-T1
OS493_003902-T1FRUCTOSAMINE 3 KINASE-RELATED PROTEIN
OS493_003903-T1
OS493_003904-T1FRUCTOSAMINE 3 KINASE-RELATED PROTEIN
OS493_003905-T1PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17
OS493_003906-T1
OS493_003907-T1
OS493_003908-T1UNCHARACTERIZED
OS493_003909-T1
OS493_003910-T1
OS493_003911-T1SIGNAL PEPTIDE PEPTIDASE
OS493_003912-T1FACT COMPLEX SUBUNIT SSRP1
OS493_003913-T1HIGH MOBILITY GROUP PROTEIN DSP1
OS493_003916-T1INTEGRAL MEMBRANE PROTEIN DGCR2/IDD
OS493_003917-T1UBIQUITIN FUSION DEGRADATON PROTEIN 1
OS493_003919-T1ABHYDROLASE DOMAIN-CONTAINING PROTEIN
OS493_003921-T1
OS493_003922-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_003923-T1
OS493_003924-T1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
OS493_003925-T1
OS493_003926-T1TRANSMEMBRANE CHANNEL-RELATED
OS493_003927-T1PHOSPHOGLYCERATE MUTASE-RELATED
OS493_003928-T1
OS493_003929-T1PTD012 PROTEIN
OS493_003930-T1
OS493_003931-T1SYNAPTIC VESICLE GLYCOPROTEIN 2
OS493_003932-T1
OS493_003933-T1UNCHARACTERIZED
OS493_003934-T1PROLINE OXIDASE
OS493_003935-T1GEMININ
OS493_003936-T1
OS493_003937-T1
OS493_003938-T1
OS493_003939-T1
OS493_003940-T1SYNTAXIN
OS493_003941-T1
OS493_003942-T1TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
OS493_003943-T1UBIQUITIN-ACTIVATING ENZYME E1
OS493_003944-T1SOLUTE CARRIER FAMILY 35 MEMBER B
OS493_003945-T1DUF614 FAMILY PROTEIN-RELATED
OS493_003946-T1
OS493_003947-T1UREASE ACCESSORY PROTEIN F
OS493_003948-T1
OS493_003949-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_003950-T1
OS493_003951-T1PROLACTIN REGULATORY ELEMENT BINDING PROTEIN
OS493_003952-T1
OS493_003953-T1
OS493_003954-T1SEVEN TRANSMEMBRANE PROTEIN 1-RELATED
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