About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004007-T1RIBONUCLEASE P_MRP PROTEIN SUBUNIT POP5
OS493_004008-T1S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE
OS493_004009-T1UNCHARACTERIZED
OS493_004010-T1
OS493_004011-T1
OS493_004012-T1
OS493_004013-T1
OS493_004014-T1
OS493_004015-T1
OS493_004016-T1
OS493_004017-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_004018-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_004019-T1
OS493_004020-T1METHYLTRANSFERASE
OS493_004021-T1METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN
OS493_004022-T1
OS493_004023-T1REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
OS493_004024-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_004025-T1ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 7
OS493_004026-T1PHOSPHOTRIESTERASE-RELATED
OS493_004027-T1ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED
OS493_004028-T1ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED
OS493_004029-T1ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED
OS493_004030-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
OS493_004031-T1G PROTEIN-COUPLED RECEPTOR 157-RELATED
OS493_004032-T1G PROTEIN-COUPLED RECEPTOR 157-RELATED
OS493_004033-T1MEVALONATE KINASE
OS493_004034-T1DIMETHYLANILINE MONOOXYGENASE
OS493_004035-T1DIMETHYLANILINE MONOOXYGENASE
OS493_004036-T1DIMETHYLANILINE MONOOXYGENASE
OS493_004037-T1
OS493_004038-T1ZGC:162509
OS493_004039-T1ZGC:162509
OS493_004040-T1DIMETHYLANILINE MONOOXYGENASE
OS493_004041-T1SUGAR KINASE
OS493_004042-T1
OS493_004043-T1RRNA METHYLTRANSFERASE 3,
OS493_004044-T1DEP DOMAIN CONTAINING PROTEIN 5
OS493_004045-T1
OS493_004046-T1
OS493_004047-T1GLYOXALASE DOMAIN-CONTAINING PROTEIN 4
OS493_004048-T1DIPHTHAMIDE BIOSYNTHESIS PROTEIN
OS493_004049-T1
OS493_004050-T1CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
OS493_004051-T1
OS493_004052-T1
OS493_004053-T1
OS493_004054-T1DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C
OS493_004055-T1DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C
OS493_004056-T1SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
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