Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_004007-T1 | RIBONUCLEASE P_MRP PROTEIN SUBUNIT POP5 |
OS493_004008-T1 | S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE |
OS493_004009-T1 | UNCHARACTERIZED |
OS493_004010-T1 | |
OS493_004011-T1 | |
OS493_004012-T1 | |
OS493_004013-T1 | |
OS493_004014-T1 | |
OS493_004015-T1 | |
OS493_004016-T1 | |
OS493_004017-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_004018-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_004019-T1 | |
OS493_004020-T1 | METHYLTRANSFERASE |
OS493_004021-T1 | METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN |
OS493_004022-T1 | |
OS493_004023-T1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
OS493_004024-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_004025-T1 | ZINC FINGER SWIM DOMAIN-CONTAINING PROTEIN 7 |
OS493_004026-T1 | PHOSPHOTRIESTERASE-RELATED |
OS493_004027-T1 | ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED |
OS493_004028-T1 | ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED |
OS493_004029-T1 | ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED |
OS493_004030-T1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
OS493_004031-T1 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
OS493_004032-T1 | G PROTEIN-COUPLED RECEPTOR 157-RELATED |
OS493_004033-T1 | MEVALONATE KINASE |
OS493_004034-T1 | DIMETHYLANILINE MONOOXYGENASE |
OS493_004035-T1 | DIMETHYLANILINE MONOOXYGENASE |
OS493_004036-T1 | DIMETHYLANILINE MONOOXYGENASE |
OS493_004037-T1 | |
OS493_004038-T1 | ZGC:162509 |
OS493_004039-T1 | ZGC:162509 |
OS493_004040-T1 | DIMETHYLANILINE MONOOXYGENASE |
OS493_004041-T1 | SUGAR KINASE |
OS493_004042-T1 | |
OS493_004043-T1 | RRNA METHYLTRANSFERASE 3, |
OS493_004044-T1 | DEP DOMAIN CONTAINING PROTEIN 5 |
OS493_004045-T1 | |
OS493_004046-T1 | |
OS493_004047-T1 | GLYOXALASE DOMAIN-CONTAINING PROTEIN 4 |
OS493_004048-T1 | DIPHTHAMIDE BIOSYNTHESIS PROTEIN |
OS493_004049-T1 | |
OS493_004050-T1 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
OS493_004051-T1 | |
OS493_004052-T1 | |
OS493_004053-T1 | |
OS493_004054-T1 | DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C |
OS493_004055-T1 | DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C |
OS493_004056-T1 | SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1 |