About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004273-T1
OS493_004274-T1ARMADILLO-TYPE FOLD-RELATED
OS493_004275-T1
OS493_004276-T1
OS493_004278-T1
OS493_004279-T1UBIQUITIN INTERACTION MOTIF-CONTAINING PROTEIN 1
OS493_004280-T1DNA-REPAIR PROTEIN XRCC1
OS493_004281-T1POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1
OS493_004282-T1
OS493_004283-T1
OS493_004284-T1
OS493_004285-T1
OS493_004288-T1KINESIN-RELATED
OS493_004289-T1KINESIN-RELATED
OS493_004290-T1INTERFERON-INDUCIBLE GTPASE
OS493_004291-T1INTERFERON-INDUCIBLE GTPASE
OS493_004292-T1INTERFERON-INDUCIBLE GTPASE
OS493_004293-T1INTERFERON-INDUCIBLE GTPASE
OS493_004294-T1INTERFERON-INDUCIBLE GTPASE
OS493_004295-T1CENTROMERE PROTEIN E
OS493_004296-T1CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
OS493_004298-T1DNA-REPAIR PROTEIN XRCC1
OS493_004299-T1
OS493_004300-T1
OS493_004301-T1
OS493_004303-T1
OS493_004304-T1POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1
OS493_004305-T1
OS493_004306-T1
OS493_004307-T1CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
OS493_004308-T1
OS493_004311-T1WD REPEAT-CONTAINING PROTEIN POP1
OS493_004312-T1
OS493_004313-T1HEME-BINDING PROTEIN-RELATED
OS493_004314-T1FRINGE-RELATED
OS493_004315-T1LEUCINE ZIPPER CONTAINING TRANSCRIPTION FACTOR LZF1
OS493_004316-T1F-BOX ONLY PROTEIN 22
OS493_004318-T1RIBOSOMAL PROTEIN S6 KINASE
OS493_004319-T1
OS493_004320-T1
OS493_004321-T1SPINSTER
OS493_004322-T1SPINSTER
OS493_004323-T1CELL CYCLE CHECKPOINT PROTEIN RAD1
OS493_004324-T1CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED
OS493_004325-T1
OS493_004326-T1CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED
OS493_004328-T1MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE
OS493_004329-T1PROTEIN HGH1 HOMOLOG
OS493_004332-T1BREAKPOINT CLUSTER REGION PROTEIN BCR
OS493_004333-T1
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