About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004217-T1
OS493_004218-T1PA-PL1 PHOSPHOLIPASE FAMILY
OS493_004219-T1T-BOX PROTEIN-RELATED
OS493_004222-T1T-BOX PROTEIN-RELATED
OS493_004223-T1
OS493_004224-T1
OS493_004225-T1
OS493_004226-T1
OS493_004227-T1
OS493_004228-T1CHONDROITIN SYNTHASE
OS493_004229-T1
OS493_004230-T1CHONDROITIN SYNTHASE
OS493_004231-T1CHONDROITIN SYNTHASE
OS493_004232-T1CHONDROITIN SYNTHASE
OS493_004233-T1CHONDROITIN SYNTHASE
OS493_004234-T1CHONDROITIN SYNTHASE
OS493_004235-T1CHONDROITIN SYNTHASE
OS493_004236-T1MYOSIN
OS493_004237-T1MYOSIN
OS493_004238-T1
OS493_004239-T1AGAP012002-PA
OS493_004240-T1
OS493_004241-T1STEROL CARRIER PROTEIN 2 SCP-2 FAMILY PROTEIN
OS493_004242-T1DEHYDROGENASES, SHORT CHAIN
OS493_004243-T1ELECTRON TRANSPORT OXIDOREDUCTASE
OS493_004244-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_004245-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_004246-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_004248-T1
OS493_004249-T1PYRUVATE DEHYDROGENASE KINASE
OS493_004250-T1BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
OS493_004251-T1INTRAFLAGELLAR TRANSPORT PROTEIN 20 HOMOLOG
OS493_004252-T1BLR2807 PROTEIN
OS493_004253-T1PEROXISOMAL SARCOSINE OXIDASE
OS493_004254-T1MITOCHONDRIAL RIBOSOMAL PROTEIN S23
OS493_004255-T1N-ACYLGLUCOSAMINE-2-EPIMERASE
OS493_004256-T1BREAST CARCINOMA AMPLIFIED SEQUENCE 3
OS493_004257-T1P2X PURINOCEPTOR
OS493_004258-T1
OS493_004259-T1NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED
OS493_004260-T1
OS493_004261-T1NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED
OS493_004262-T1
OS493_004263-T1
OS493_004264-T1
OS493_004265-T1
OS493_004266-T1
OS493_004267-T1
OS493_004268-T1
OS493_004269-T1SYNAPTIC VESICLE GLYCOPROTEIN 2
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