About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004334-T1SERINE/THREONINE-PROTEIN KINASE TAO1-LIKE PROTEIN
OS493_004335-T1BIS(5'-ADENOSYL)-TRIPHOSPHATASE
OS493_004336-T1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
OS493_004337-T1
OS493_004338-T1
OS493_004339-T1MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE
OS493_004340-T1MANNOSYL-OLIGOSACCHARIDE GLUCOSIDASE
OS493_004341-T1ZYGOTE-SPECIFIC CLASS V COPY B GENE PROTEIN
OS493_004342-T1
OS493_004343-T1ZYGOTE-SPECIFIC CLASS V COPY B GENE PROTEIN
OS493_004344-T1
OS493_004345-T1
OS493_004346-T1
OS493_004347-T1ZYGOTE-SPECIFIC CLASS V COPY B GENE PROTEIN
OS493_004348-T1
OS493_004349-T1ZYGOTE-SPECIFIC CLASS V COPY B GENE PROTEIN
OS493_004350-T1INOSITOL 5-PHOSPHATASE
OS493_004351-T1BETA-GLUCURONIDASE
OS493_004352-T1
OS493_004353-T1G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
OS493_004356-T1HOMEO BOX HB9 LIKE A-RELATED
OS493_004357-T1HOMEO BOX HB9 LIKE A-RELATED
OS493_004359-T1
OS493_004360-T1HERMANSKY-PUDLAK SYNDROME 4 PROTEIN LIGHT-EAR PROTEIN-RELATED
OS493_004361-T1HERMANSKY-PUDLAK SYNDROME 4 PROTEIN LIGHT-EAR PROTEIN-RELATED
OS493_004362-T1SERINE/THREONINE-PROTEIN KINASE
OS493_004363-T1
OS493_004364-T1ATPASE N2B
OS493_004365-T1
OS493_004366-T1P-LOOP CONTAINING NUCLEOTIDE TRIPHOSPHATE HYDROLASE
OS493_004367-T1T-BOX PROTEIN-RELATED
OS493_004368-T1T-BOX PROTEIN-RELATED
OS493_004369-T1
OS493_004370-T1
OS493_004371-T1DNA REPAIR PROTEIN RAD9
OS493_004372-T1TETRASPANIN
OS493_004373-T1
OS493_004374-T1CARBONIC ANHYDRASE
OS493_004375-T1
OS493_004376-T1RING FINGER PROTEIN 25
OS493_004377-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_004378-T1PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED
OS493_004379-T1
OS493_004380-T1UNCHARACTERIZED
OS493_004381-T1BOULE-RELATED
OS493_004382-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_004383-T1
OS493_004384-T1
OS493_004385-T1MATRIN 3/NUCLEAR PROTEIN 220-RELATED
OS493_004386-T1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
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