Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_004492-T1 | AGAP008170-PA |
OS493_004493-T1 | REGULATOR OF TY1 TRANSPOSITION PROTEIN 107 |
OS493_004494-T1 | PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN |
OS493_004495-T1 | GUANYLATE BINDING PROTEIN |
OS493_004497-T1 | |
OS493_004498-T1 | |
OS493_004499-T1 | |
OS493_004500-T1 | |
OS493_004501-T1 | GUANYLATE BINDING PROTEIN |
OS493_004502-T1 | TESTIS EXPRESSED GENE 14 |
OS493_004503-T1 | TESTIS EXPRESSED GENE 14 |
OS493_004504-T1 | PROTEIN CBG12054-RELATED |
OS493_004505-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_004506-T1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
OS493_004507-T1 | L-GULONOLACTONE OXIDASE |
OS493_004508-T1 | |
OS493_004509-T1 | RUN AND SH3 DOMAIN CONTAINING |
OS493_004510-T1 | TESTIS EXPRESSED GENE 14 |
OS493_004511-T1 | |
OS493_004512-T1 | |
OS493_004515-T1 | GUANYLATE BINDING PROTEIN |
OS493_004516-T1 | |
OS493_004517-T1 | RUN AND SH3 DOMAIN CONTAINING |
OS493_004518-T1 | |
OS493_004519-T1 | |
OS493_004520-T1 | DEUBIQUITINATING PROTEIN VCIP135 |
OS493_004521-T1 | DEUBIQUITINATING PROTEIN VCIP135 |
OS493_004523-T1 | FORKHEAD BOX PROTEIN O |
OS493_004524-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_004525-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_004526-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
OS493_004527-T1 | KELCH REPEAT DOMAIN |
OS493_004528-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_004529-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_004530-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_004531-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_004532-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_004533-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_004534-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_004535-T1 | TGF-BETA FAMILY |
OS493_004536-T1 | SOX TRANSCRIPTION FACTOR |
OS493_004537-T1 | |
OS493_004538-T1 | |
OS493_004540-T1 | RAS-RELATED PROTEIN RAB |
OS493_004542-T1 | HISTIDINE TRIAD HIT PROTEIN MEMBER |
OS493_004543-T1 | HISTIDINE TRIAD HIT PROTEIN MEMBER |
OS493_004544-T1 | ADP RIBOSYLATION FACTOR-RELATED |
OS493_004545-T1 | ADP RIBOSYLATION FACTOR-RELATED |
OS493_004546-T1 | SPLICING FACTOR 3A SUBUNIT 2 |
OS493_004547-T1 |