Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_004548-T1 | |
OS493_004549-T1 | UNCHARACTERIZED |
OS493_004552-T1 | NB-ARC AND TPR DOMAIN PROTEIN |
OS493_004553-T1 | F-BOX ONLY PROTEIN |
OS493_004554-T1 | |
OS493_004555-T1 | |
OS493_004556-T1 | |
OS493_004557-T1 | |
OS493_004558-T1 | |
OS493_004559-T1 | |
OS493_004560-T1 | NB-ARC AND TPR DOMAIN PROTEIN |
OS493_004561-T1 | |
OS493_004562-T1 | |
OS493_004563-T1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
OS493_004564-T1 | UNCHARACTERIZED |
OS493_004565-T1 | PROTEIN CBG12474 |
OS493_004566-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_004567-T1 | |
OS493_004569-T1 | |
OS493_004570-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_004571-T1 | |
OS493_004572-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_004573-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_004574-T1 | CONTACTIN 5 |
OS493_004576-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_004577-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_004578-T1 | CONTACTIN 5 |
OS493_004579-T1 | CONTACTIN 5 |
OS493_004580-T1 | |
OS493_004581-T1 | |
OS493_004582-T1 | |
OS493_004583-T1 | |
OS493_004584-T1 | TGF-BETA FAMILY |
OS493_004585-T1 | |
OS493_004586-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_004587-T1 | RIBOSOMAL PROTEIN L15 |
OS493_004588-T1 | RAN BINDING PROTEIN 9-RELATED |
OS493_004589-T1 | RIBOSOMAL PROTEIN L13 |
OS493_004590-T1 | NUCLEOPORIN NUP35 |
OS493_004591-T1 | UNCHARACTERIZED |
OS493_004592-T1 | INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATED |
OS493_004593-T1 | NCK-ASSOCIATED PROTEIN 1 |
OS493_004594-T1 | |
OS493_004595-T1 | NCK-ASSOCIATED PROTEIN 1 |
OS493_004596-T1 | CD59 GLYCOPROTEIN |
OS493_004597-T1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
OS493_004598-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
OS493_004599-T1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
OS493_004601-T1 | CAMP-BINDING PROTEIN 1-RELATED |
OS493_004602-T1 | UNCHARACTERIZED |