About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004548-T1
OS493_004549-T1UNCHARACTERIZED
OS493_004552-T1NB-ARC AND TPR DOMAIN PROTEIN
OS493_004553-T1F-BOX ONLY PROTEIN
OS493_004554-T1
OS493_004555-T1
OS493_004556-T1
OS493_004557-T1
OS493_004558-T1
OS493_004559-T1
OS493_004560-T1NB-ARC AND TPR DOMAIN PROTEIN
OS493_004561-T1
OS493_004562-T1
OS493_004563-T1DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
OS493_004564-T1UNCHARACTERIZED
OS493_004565-T1PROTEIN CBG12474
OS493_004566-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004567-T1
OS493_004569-T1
OS493_004570-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_004571-T1
OS493_004572-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_004573-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_004574-T1CONTACTIN 5
OS493_004576-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_004577-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_004578-T1CONTACTIN 5
OS493_004579-T1CONTACTIN 5
OS493_004580-T1
OS493_004581-T1
OS493_004582-T1
OS493_004583-T1
OS493_004584-T1TGF-BETA FAMILY
OS493_004585-T1
OS493_004586-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_004587-T1RIBOSOMAL PROTEIN L15
OS493_004588-T1RAN BINDING PROTEIN 9-RELATED
OS493_004589-T1RIBOSOMAL PROTEIN L13
OS493_004590-T1NUCLEOPORIN NUP35
OS493_004591-T1UNCHARACTERIZED
OS493_004592-T1INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN-RELATED
OS493_004593-T1NCK-ASSOCIATED PROTEIN 1
OS493_004594-T1
OS493_004595-T1NCK-ASSOCIATED PROTEIN 1
OS493_004596-T1CD59 GLYCOPROTEIN
OS493_004597-T1CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
OS493_004598-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
OS493_004599-T1SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA
OS493_004601-T1CAMP-BINDING PROTEIN 1-RELATED
OS493_004602-T1UNCHARACTERIZED
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