Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_004706-T1 | |
OS493_004707-T1 | |
OS493_004708-T1 | |
OS493_004709-T1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
OS493_004710-T1 | TRANSMEMBRANE PROTEIN 199 |
OS493_004711-T1 | |
OS493_004712-T1 | AGAP003327-PA |
OS493_004713-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_004714-T1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
OS493_004715-T1 | |
OS493_004716-T1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
OS493_004717-T1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
OS493_004718-T1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
OS493_004719-T1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
OS493_004720-T1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
OS493_004721-T1 | |
OS493_004722-T1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
OS493_004723-T1 | CUBILIN-LIKE PROTEIN |
OS493_004724-T1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
OS493_004725-T1 | CUBILIN-LIKE PROTEIN |
OS493_004726-T1 | OVOCHYMASE-RELATED |
OS493_004727-T1 | CUBILIN-LIKE PROTEIN |
OS493_004728-T1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
OS493_004729-T1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
OS493_004730-T1 | PHOSPHATASE WITH HOMOLOGY TO TENSIN |
OS493_004731-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
OS493_004732-T1 | GROUP XII SECRETORY PHOSPHOLIPASE A2 FAMILY MEMBER |
OS493_004733-T1 | |
OS493_004734-T1 | |
OS493_004735-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_004736-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_004737-T1 | OPSIN |
OS493_004738-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
OS493_004739-T1 | NUCLEAR FACTOR NF-KAPPA-B PROTEIN |
OS493_004740-T1 | NUCLEAR FACTOR NF-KAPPA-B PROTEIN |
OS493_004741-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_004742-T1 | |
OS493_004743-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_004744-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_004745-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_004746-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_004747-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
OS493_004748-T1 | CYTOSKELETON-ASSOCIATED PROTEIN 4 |
OS493_004749-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_004750-T1 | |
OS493_004751-T1 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
OS493_004752-T1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
OS493_004754-T1 | |
OS493_004755-T1 | |
OS493_004756-T1 | NACHT DOMAIN-CONTAINING PROTEIN |