About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004706-T1
OS493_004707-T1
OS493_004708-T1
OS493_004709-T1FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
OS493_004710-T1TRANSMEMBRANE PROTEIN 199
OS493_004711-T1
OS493_004712-T1AGAP003327-PA
OS493_004713-T1G-PROTEIN COUPLED RECEPTOR
OS493_004714-T1METALLOPEPTIDASE M28 FAMILY MEMBER
OS493_004715-T1
OS493_004716-T1ADENOSINE/GUANOSINE DIPHOSPHATASE
OS493_004717-T1RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN
OS493_004718-T1RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN
OS493_004719-T1METALLOPEPTIDASE M28 FAMILY MEMBER
OS493_004720-T1METALLOPEPTIDASE M28 FAMILY MEMBER
OS493_004721-T1
OS493_004722-T1METALLOPEPTIDASE M28 FAMILY MEMBER
OS493_004723-T1CUBILIN-LIKE PROTEIN
OS493_004724-T1METALLOPEPTIDASE M28 FAMILY MEMBER
OS493_004725-T1CUBILIN-LIKE PROTEIN
OS493_004726-T1OVOCHYMASE-RELATED
OS493_004727-T1CUBILIN-LIKE PROTEIN
OS493_004728-T1METALLOPEPTIDASE M28 FAMILY MEMBER
OS493_004729-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
OS493_004730-T1PHOSPHATASE WITH HOMOLOGY TO TENSIN
OS493_004731-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_004732-T1GROUP XII SECRETORY PHOSPHOLIPASE A2 FAMILY MEMBER
OS493_004733-T1
OS493_004734-T1
OS493_004735-T1G PROTEIN-COUPLED RECEPTOR
OS493_004736-T1G PROTEIN-COUPLED RECEPTOR
OS493_004737-T1OPSIN
OS493_004738-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
OS493_004739-T1NUCLEAR FACTOR NF-KAPPA-B PROTEIN
OS493_004740-T1NUCLEAR FACTOR NF-KAPPA-B PROTEIN
OS493_004741-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_004742-T1
OS493_004743-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_004744-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004745-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_004746-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_004747-T1GUANINE NUCLEOTIDE EXCHANGE FACTOR
OS493_004748-T1CYTOSKELETON-ASSOCIATED PROTEIN 4
OS493_004749-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_004750-T1
OS493_004751-T1GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD
OS493_004752-T1DILUTE DOMAIN-CONTAINING PROTEIN YPR089W
OS493_004754-T1
OS493_004755-T1
OS493_004756-T1NACHT DOMAIN-CONTAINING PROTEIN
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