Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_004860-T1 | |
OS493_004861-T1 | |
OS493_004862-T1 | TUDOR DOMAIN CONTAINING PROTEIN |
OS493_004863-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_004864-T1 | VACUOLAR PROTEIN 8 |
OS493_004865-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_004866-T1 | U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A |
OS493_004867-T1 | PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT |
OS493_004868-T1 | PQ-LOOP REPEAT-CONTAINING PROTEIN 1-LIKE PROTEIN |
OS493_004869-T1 | LYSYL-TRNA SYNTHETASE |
OS493_004870-T1 | OTU DOMAIN CONTAINING PROTEIN |
OS493_004871-T1 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED |
OS493_004872-T1 | TRNA-SPECIFIC ADENOSINE DEAMINASE 1 |
OS493_004873-T1 | TRNA-SPECIFIC ADENOSINE DEAMINASE 1 |
OS493_004874-T1 | CHST5 PROTEIN |
OS493_004875-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_004876-T1 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
OS493_004877-T1 | D-LACTATE DEHYDROGENASE |
OS493_004878-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_004879-T1 | IONOTROPIC GLUTAMATE RECEPTOR |
OS493_004880-T1 | LYSINE-SPECIFIC DEMETHYLASE |
OS493_004881-T1 | |
OS493_004882-T1 | |
OS493_004883-T1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
OS493_004884-T1 | |
OS493_004885-T1 | DNA LIGASE |
OS493_004886-T1 | |
OS493_004887-T1 | |
OS493_004888-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_004889-T1 | |
OS493_004890-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_004891-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_004892-T1 | DOPAMINE BETA HYDROXYLASE RELATED |
OS493_004893-T1 | DUAL SPECIFICITY PROTEIN KINASE |
OS493_004894-T1 | |
OS493_004895-T1 | |
OS493_004896-T1 | |
OS493_004897-T1 | |
OS493_004898-T1 | |
OS493_004899-T1 | CELL DIVISION PROTEIN KINASE |
OS493_004900-T1 | CELL DIVISION PROTEIN KINASE |
OS493_004901-T1 | |
OS493_004902-T1 | MOLTING PROTEIN MLT-4 |
OS493_004903-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
OS493_004904-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27 |
OS493_004905-T1 | MALONYL-COA ACP TRANSACYLASE, ACP-BINDING |
OS493_004906-T1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
OS493_004907-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
OS493_004908-T1 | UNCHARACTERIZED |
OS493_004909-T1 | HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBER |