About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004860-T1
OS493_004861-T1
OS493_004862-T1TUDOR DOMAIN CONTAINING PROTEIN
OS493_004863-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_004864-T1VACUOLAR PROTEIN 8
OS493_004865-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004866-T1U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A
OS493_004867-T1PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT
OS493_004868-T1PQ-LOOP REPEAT-CONTAINING PROTEIN 1-LIKE PROTEIN
OS493_004869-T1LYSYL-TRNA SYNTHETASE
OS493_004870-T1OTU DOMAIN CONTAINING PROTEIN
OS493_004871-T1MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED
OS493_004872-T1TRNA-SPECIFIC ADENOSINE DEAMINASE 1
OS493_004873-T1TRNA-SPECIFIC ADENOSINE DEAMINASE 1
OS493_004874-T1CHST5 PROTEIN
OS493_004875-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_004876-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_004877-T1D-LACTATE DEHYDROGENASE
OS493_004878-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_004879-T1IONOTROPIC GLUTAMATE RECEPTOR
OS493_004880-T1LYSINE-SPECIFIC DEMETHYLASE
OS493_004881-T1
OS493_004882-T1
OS493_004883-T1DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED
OS493_004884-T1
OS493_004885-T1DNA LIGASE
OS493_004886-T1
OS493_004887-T1
OS493_004888-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_004889-T1
OS493_004890-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_004891-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_004892-T1DOPAMINE BETA HYDROXYLASE RELATED
OS493_004893-T1DUAL SPECIFICITY PROTEIN KINASE
OS493_004894-T1
OS493_004895-T1
OS493_004896-T1
OS493_004897-T1
OS493_004898-T1
OS493_004899-T1CELL DIVISION PROTEIN KINASE
OS493_004900-T1CELL DIVISION PROTEIN KINASE
OS493_004901-T1
OS493_004902-T1MOLTING PROTEIN MLT-4
OS493_004903-T1ANKYRIN REPEAT FAMILY PROTEIN
OS493_004904-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 27
OS493_004905-T1MALONYL-COA ACP TRANSACYLASE, ACP-BINDING
OS493_004906-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
OS493_004907-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_004908-T1UNCHARACTERIZED
OS493_004909-T1HOMOCYSTEINE-RESPONSIVE ENDOPLASMIC RETICULUM-RESIDENT UNIQUITIN-LIKE DOMAIN HERPUD PROTEIN FAMILY MEMBER
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