About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004910-T1
OS493_004911-T1CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER
OS493_004912-T1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
OS493_004913-T1MACROGLOBULIN / COMPLEMENT
OS493_004914-T1
OS493_004915-T1MACROGLOBULIN / COMPLEMENT
OS493_004916-T1MACROGLOBULIN / COMPLEMENT
OS493_004917-T1-
OS493_004918-T1
OS493_004919-T1TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1
OS493_004920-T1UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
OS493_004921-T1
OS493_004922-T1
OS493_004923-T1POLYAMINE-MODULATED FACTOR 1-BINDING PROTEIN 1-RELATED
OS493_004924-T1
OS493_004925-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004926-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004927-T1-
OS493_004928-T1MULTIDRUG RESISTANCE PROTEIN
OS493_004929-T1
OS493_004930-T1
OS493_004931-T1
OS493_004932-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12
OS493_004933-T1LIG_CHAN-GLU_BD DOMAIN-CONTAINING PROTEIN
OS493_004934-T1PREFOLDIN SUBUNIT 4
OS493_004935-T137S RIBOSOMAL PROTEIN S22
OS493_004936-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_004937-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_004938-T1
OS493_004939-T1TARGETING PROTEIN FOR XKLP2
OS493_004940-T1FG-GAP REPEAT-CONTAINING PROTEIN
OS493_004941-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
OS493_004942-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_004943-T1
OS493_004944-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004945-T1
OS493_004946-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004947-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004948-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004949-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004950-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_004951-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004952-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_004953-T1INTELECTIN
OS493_004954-T1
OS493_004955-T1UBIQUINONE BIOSYNTHESIS PROTEIN COQ9, MITOCHONDRIAL
OS493_004956-T1PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
OS493_004957-T1T-CELL IMMUNOMODULATORY PROTEIN HOMOLOG
OS493_004959-T1LEUCINE RICH REPEAT FAMILY PROTEIN
OS493_004960-T1ADHESION G-PROTEIN COUPLED RECEPTOR
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