Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_005013-T1 | |
OS493_005014-T1 | NUCLEAR RECEPTOR COACTIVATOR 5-RELATED |
OS493_005015-T1 | |
OS493_005016-T1 | ENDO-1,4-BETA-GLUCANASE |
OS493_005018-T1 | ENDO-1,4-BETA-GLUCANASE |
OS493_005019-T1 | MATRIX METALLOPROTEINASE |
OS493_005020-T1 | MATRIX METALLOPROTEINASE |
OS493_005021-T1 | MATRIX METALLOPROTEINASE |
OS493_005022-T1 | MATRIX METALLOPROTEINASE |
OS493_005023-T1 | NEGATIVE ELONGATION FACTOR D |
OS493_005024-T1 | MSF1/PX19 RELATED |
OS493_005025-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 |
OS493_005026-T1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
OS493_005027-T1 | SUGAR KINASE |
OS493_005028-T1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
OS493_005029-T1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
OS493_005030-T1 | UBIQUITIN-ACTIVATING ENZYME E1 |
OS493_005031-T1 | |
OS493_005032-T1 | TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED |
OS493_005033-T1 | ALANYL-TRNA SYNTHETASE |
OS493_005034-T1 | FATTY ACID HYDROXYLASE |
OS493_005035-T1 | |
OS493_005036-T1 | |
OS493_005037-T1 | |
OS493_005038-T1 | PROTEIN ARGININE N-METHYLTRANSFERASE 5 |
OS493_005039-T1 | OPSIN |
OS493_005040-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_005041-T1 | VOLTAGE-GATED POTASSIUM CHANNEL |
OS493_005043-T1 | GLUTATHIONE SYNTHETASE |
OS493_005044-T1 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
OS493_005045-T1 | |
OS493_005046-T1 | 4.1 G PROTEIN |
OS493_005047-T1 | DYNEIN REGULATORY COMPLEX SUBUNIT 4 |
OS493_005048-T1 | DYNEIN REGULATORY COMPLEX SUBUNIT 4 |
OS493_005049-T1 | DYNEIN REGULATORY COMPLEX SUBUNIT 4 |
OS493_005050-T1 | SIALATE O-ACETYLESTERASE |
OS493_005051-T1 | SIALATE O-ACETYLESTERASE |
OS493_005052-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_005053-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
OS493_005055-T1 | |
OS493_005058-T1 | |
OS493_005059-T1 | |
OS493_005060-T1 | |
OS493_005061-T1 | |
OS493_005062-T1 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
OS493_005063-T1 | SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT |
OS493_005065-T1 | |
OS493_005066-T1 | TGF-BETA INDUCED APOPTOSIS PROTEIN |
OS493_005067-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_005068-T1 | ATP-DEPENDENT PROTEASE |