About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_004757-T1
OS493_004758-T1
OS493_004759-T1SOLUTE CARRIER FAMILY 39
OS493_004760-T1SOLUTE CARRIER FAMILY 39
OS493_004761-T1SOLUTE CARRIER FAMILY 39
OS493_004762-T1RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
OS493_004763-T1
OS493_004764-T1
OS493_004765-T1BETA-HEXOSAMINIDASE
OS493_004766-T1BETA-HEXOSAMINIDASE
OS493_004767-T1
OS493_004768-T1
OS493_004769-T1RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
OS493_004770-T1RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
OS493_004771-T1BETA-HEXOSAMINIDASE
OS493_004772-T1
OS493_004773-T1
OS493_004774-T1
OS493_004775-T1
OS493_004776-T1BETA-HEXOSAMINIDASE
OS493_004777-T1BETA-HEXOSAMINIDASE
OS493_004778-T1BETA-HEXOSAMINIDASE
OS493_004779-T1ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD
OS493_004780-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 3
OS493_004781-T1
OS493_004782-T1
OS493_004783-T1PROPERDIN
OS493_004785-T1PROPERDIN
OS493_004786-T1SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
OS493_004787-T1FTP DOMAIN-CONTAINING PROTEIN
OS493_004788-T1
OS493_004789-T1
OS493_004790-T1OXYSTEROL-BINDING PROTEIN-RELATED
OS493_004792-T1
OS493_004793-T1G PATCH DOMAIN CONTAINING PROTEIN
OS493_004794-T1U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C
OS493_004795-T1SERINE/THREONINE-PROTEIN KINASE PLK
OS493_004796-T1DNA2/NAM7 HELICASE FAMILY MEMBER
OS493_004797-T1
OS493_004798-T1
OS493_004799-T1MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE
OS493_004800-T1SERINE PROTEASE
OS493_004801-T1
OS493_004802-T1SERINE PROTEASE
OS493_004803-T1TBC1 DOMAIN FAMILY MEMBER 7
OS493_004804-T1FOS TRANSCRIPTION FACTOR-RELATED
OS493_004805-T126S PROTEASOME REGULATORY SUBUNIT
OS493_004806-T1
OS493_004807-T1TESTICULAR HAPLOID EXPRESSED GENE PROTEIN
OS493_004808-T1
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