About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_005332-T1MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
OS493_005333-T1NUCLEOREDOXIN
OS493_005334-T1NUCLEOREDOXIN
OS493_005335-T1
OS493_005338-T1CALCIUM-BINDING PROTEIN 8-RELATED
OS493_005339-T1
OS493_005340-T1
OS493_005341-T1
OS493_005342-T1CD59 GLYCOPROTEIN
OS493_005343-T1
OS493_005344-T1
OS493_005345-T1
OS493_005346-T1
OS493_005347-T1
OS493_005348-T1CD59 GLYCOPROTEIN
OS493_005349-T1CD59 GLYCOPROTEIN
OS493_005350-T1
OS493_005351-T1MONOCARBOXYLATE TRANSPORTER
OS493_005352-T1MONOCARBOXYLATE TRANSPORTER
OS493_005353-T1MONOCARBOXYLATE TRANSPORTER
OS493_005354-T1MONOCARBOXYLATE TRANSPORTER
OS493_005355-T1MONOCARBOXYLATE TRANSPORTER
OS493_005356-T1
OS493_005357-T1E3 UBIQUITIN-PROTEIN LIGASE RNF8
OS493_005358-T1UNCHARACTERIZED
OS493_005359-T1UNCHARACTERIZED
OS493_005360-T1
OS493_005361-T1
OS493_005362-T1-
OS493_005365-T1RBP-RELATED
OS493_005366-T1
OS493_005367-T1SEL-1-LIKE PROTEIN
OS493_005368-T1SEL-1-LIKE PROTEIN
OS493_005369-T1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
OS493_005370-T1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
OS493_005371-T1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
OS493_005372-T1
OS493_005374-T1
OS493_005375-T1
OS493_005376-T1
OS493_005377-T1
OS493_005378-T1
OS493_005379-T1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
OS493_005380-T1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
OS493_005382-T1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
OS493_005383-T1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
OS493_005385-T1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
OS493_005386-T1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
OS493_005387-T1VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM
OS493_005389-T1FIBROBLAST GROWTH FACTOR
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