Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_005390-T1 | UNCHARACTERIZED |
OS493_005391-T1 | ZGC:174356 |
OS493_005392-T1 | ZGC:174356 |
OS493_005393-T1 | UNCHARACTERIZED |
OS493_005394-T1 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
OS493_005395-T1 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
OS493_005396-T1 | N-ACETYLGLUCOSAMINYLTRANSFERASE VI |
OS493_005398-T1 | |
OS493_005399-T1 | CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT DELTA-RELATED |
OS493_005400-T1 | 2-AMINOETHYLPHOSPHONATE--PYRUVATE TRANSAMINASE |
OS493_005401-T1 | |
OS493_005402-T1 | |
OS493_005403-T1 | AFTIPHILIN A-RELATED |
OS493_005404-T1 | |
OS493_005405-T1 | URIDINE DIPHOSPHATE GLUCOSE PYROPHOSPHATASE |
OS493_005406-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S18 |
OS493_005407-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S18 |
OS493_005408-T1 | 30S RIBOSOMAL PROTEIN S18 |
OS493_005409-T1 | INOSITOL-TETRAKISPHOSPHATE 1-KINASE |
OS493_005410-T1 | |
OS493_005411-T1 | UNCHARACTERIZED |
OS493_005412-T1 | UNCHARACTERIZED |
OS493_005413-T1 | UNCHARACTERIZED |
OS493_005414-T1 | UNCHARACTERIZED |
OS493_005415-T1 | UNCHARACTERIZED |
OS493_005416-T1 | UNCHARACTERIZED |
OS493_005417-T1 | |
OS493_005418-T1 | |
OS493_005419-T1 | |
OS493_005420-T1 | |
OS493_005421-T1 | |
OS493_005422-T1 | |
OS493_005423-T1 | SERINE-THREONINE PROTEIN KINASE |
OS493_005424-T1 | |
OS493_005425-T1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
OS493_005426-T1 | RAS-RELATED PROTEIN RAB |
OS493_005427-T1 | DRAB11-RELATED |
OS493_005428-T1 | OS01G0253100 PROTEIN |
OS493_005429-T1 | |
OS493_005430-T1 | CYTOKINE RECEPTOR |
OS493_005431-T1 | CYTOKINE RECEPTOR |
OS493_005432-T1 | NETRIN/LAMININ-RELATED |
OS493_005433-T1 | NETRIN/LAMININ-RELATED |
OS493_005434-T1 | GLE-1-RELATED |
OS493_005435-T1 | |
OS493_005436-T1 | PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED |
OS493_005437-T1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED |
OS493_005438-T1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
OS493_005439-T1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
OS493_005441-T1 |