About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_005494-T1ZINC FINGER, CCHC DOMAIN CONTAINING 8
OS493_005495-T1
OS493_005496-T1
OS493_005497-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_005498-T1MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
OS493_005499-T1
OS493_005500-T1
OS493_005501-T1
OS493_005502-T1TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
OS493_005503-T1
OS493_005504-T1SACSIN
OS493_005505-T1SACSIN
OS493_005506-T1SACSIN
OS493_005507-T1SACSIN
OS493_005508-T1SACSIN
OS493_005509-T1FRG1 PROTEIN
OS493_005510-T1ZGC:174356
OS493_005511-T1ARYLSULFATASE FAMILY MEMBER
OS493_005512-T1CALCIUM BINDING PROTEIN
OS493_005513-T1CALCIUM BINDING PROTEIN
OS493_005514-T1ATR-INTERACTING PROTEIN
OS493_005515-T1ATR-INTERACTING PROTEIN
OS493_005516-T1HIGH MOBILITY GROUP PROTEIN DSP1
OS493_005517-T1POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
OS493_005518-T1UPSTREAM BINDING TRANSCRIPTION FACTOR
OS493_005519-T1POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE
OS493_005520-T1
OS493_005521-T1GOLGIN-84
OS493_005522-T1SODIUM/CALCIUM EXCHANGER
OS493_005523-T1SOLUBLE NSF ATTACHMENT PROTEIN SNAP
OS493_005524-T1N-ALPHA-ACETYLTRANSFERASE 40
OS493_005525-T1ADENYLOSUCCINATE SYNTHETASE
OS493_005526-T1
OS493_005527-T1FAS-ASSOCIATED PROTEIN
OS493_005528-T1
OS493_005529-T1EXPRESSED PROTEIN
OS493_005530-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_005531-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_005532-T1KETIMINE REDUCTASE MU-CRYSTALLIN
OS493_005533-T1UNCHARACTERIZED
OS493_005534-T1
OS493_005535-T1
OS493_005536-T1
OS493_005537-T1DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
OS493_005538-T1DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
OS493_005539-T1
OS493_005540-T1
OS493_005541-T1
OS493_005542-T1
OS493_005543-T1PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN
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