Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_005649-T1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
OS493_005650-T1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
OS493_005652-T1 | SUGAR KINASE |
OS493_005653-T1 | ACTIN |
OS493_005654-T1 | CYCLIN-DEPENDENT KINASE 2-INTERACTING PROTEIN |
OS493_005655-T1 | |
OS493_005656-T1 | ZINC FINGER C2HC DOMAIN-CONTAINING PROTEIN 1C |
OS493_005657-T1 | SI:DKEY-16J16.4 |
OS493_005658-T1 | PROTEIN CBG16200 |
OS493_005659-T1 | PROTEIN CBG16200 |
OS493_005660-T1 | EXPORTIN 1/5 |
OS493_005661-T1 | |
OS493_005662-T1 | CYTOSINE DEAMINASE FAMILY MEMBER |
OS493_005663-T1 | |
OS493_005664-T1 | |
OS493_005665-T1 | |
OS493_005666-T1 | |
OS493_005667-T1 | MOLYBDOPTERIN COFACTOR SULFURASE MOSC |
OS493_005668-T1 | PROTEIN EVA-1 |
OS493_005670-T1 | |
OS493_005671-T1 | |
OS493_005672-T1 | |
OS493_005673-T1 | |
OS493_005674-T1 | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED |
OS493_005675-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_005676-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_005677-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_005678-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_005679-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
OS493_005680-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_005682-T1 | |
OS493_005683-T1 | |
OS493_005684-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
OS493_005685-T1 | CATION CHANNEL SPERM-ASSOCIATED PROTEIN 1 |
OS493_005686-T1 | CCAAT-BINDING FACTOR-RELATED |
OS493_005687-T1 | INOSITOL POLYPHOSPHATE KINASE 1 |
OS493_005688-T1 | SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR |
OS493_005689-T1 | UNCHARACTERIZED |
OS493_005690-T1 | DRAB11-RELATED |
OS493_005691-T1 | GUANYLATE BINDING PROTEIN |
OS493_005692-T1 | GUANYLATE BINDING PROTEIN |
OS493_005693-T1 | |
OS493_005694-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_005695-T1 | GLYCOGEN PHOSPHORYLASE |
OS493_005696-T1 | GLYCOGEN PHOSPHORYLASE |
OS493_005697-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_005698-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_005699-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
OS493_005700-T1 | |
OS493_005701-T1 |