Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_005808-T1 | |
OS493_005809-T1 | IGF-LIKE FAMILY RECEPTOR 1 |
OS493_005811-T1 | IRON-SULFUR PROTEIN NUBPL |
OS493_005813-T1 | |
OS493_005814-T1 | IGF-LIKE FAMILY RECEPTOR 1 |
OS493_005815-T1 | OTU DOMAIN CONTAINING PROTEIN |
OS493_005816-T1 | MRNA EXPORT FACTOR AND BUB3 |
OS493_005818-T1 | MRNA EXPORT FACTOR AND BUB3 |
OS493_005819-T1 | IRON-SULFUR PROTEIN NUBPL |
OS493_005820-T1 | |
OS493_005821-T1 | |
OS493_005822-T1 | INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E |
OS493_005823-T1 | SURFEIT LOCUS PROTEIN 2 |
OS493_005824-T1 | UNCHARACTERIZED |
OS493_005825-T1 | UNCHARACTERIZED |
OS493_005826-T1 | UNCHARACTERIZED |
OS493_005827-T1 | UNCHARACTERIZED |
OS493_005828-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
OS493_005829-T1 | L-CYSTEINE DESULFHYDRASE |
OS493_005830-T1 | ATP-DEPENDENT RNA HELICASE DBP3 |
OS493_005831-T1 | FOLYLPOLYGLUTAMATE SYNTHASE-RELATED |
OS493_005832-T1 | DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT |
OS493_005833-T1 | DYNACTIN SUBUNIT 3 |
OS493_005834-T1 | CRYPTOCHROME |
OS493_005835-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22 |
OS493_005836-T1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
OS493_005837-T1 | |
OS493_005838-T1 | |
OS493_005839-T1 | |
OS493_005840-T1 | IGF-LIKE FAMILY RECEPTOR 1 |
OS493_005841-T1 | |
OS493_005842-T1 | GEM-ASSOCIATED PROTEIN 4 |
OS493_005843-T1 | GEM-ASSOCIATED PROTEIN 4 |
OS493_005844-T1 | PROTEIN YIPPEE-LIKE CG15309-RELATED |
OS493_005845-T1 | PROTEIN YIPPEE-LIKE CG15309-RELATED |
OS493_005846-T1 | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS |
OS493_005847-T1 | TRANSMEMBRANE PROTEIN 198 FAMILY MEMBER |
OS493_005848-T1 | |
OS493_005849-T1 | |
OS493_005850-T1 | |
OS493_005851-T1 | |
OS493_005852-T1 | |
OS493_005853-T1 | |
OS493_005854-T1 | TRANSCRIPTION INITIATION FACTOR IIB-RELATED |
OS493_005855-T1 | PROTEIN C10 |
OS493_005856-T1 | SOLUTE CARRIER FAMILY 25 |
OS493_005857-T1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
OS493_005858-T1 | TRANSMEMBRANE PROTEIN 163 |
OS493_005859-T1 | TRANSMEMBRANE PROTEIN 163 |
OS493_005860-T1 | TRANSMEMBRANE PROTEIN 163 |