About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_005808-T1
OS493_005809-T1IGF-LIKE FAMILY RECEPTOR 1
OS493_005811-T1IRON-SULFUR PROTEIN NUBPL
OS493_005813-T1
OS493_005814-T1IGF-LIKE FAMILY RECEPTOR 1
OS493_005815-T1OTU DOMAIN CONTAINING PROTEIN
OS493_005816-T1MRNA EXPORT FACTOR AND BUB3
OS493_005818-T1MRNA EXPORT FACTOR AND BUB3
OS493_005819-T1IRON-SULFUR PROTEIN NUBPL
OS493_005820-T1
OS493_005821-T1
OS493_005822-T1INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E
OS493_005823-T1SURFEIT LOCUS PROTEIN 2
OS493_005824-T1UNCHARACTERIZED
OS493_005825-T1UNCHARACTERIZED
OS493_005826-T1UNCHARACTERIZED
OS493_005827-T1UNCHARACTERIZED
OS493_005828-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_005829-T1L-CYSTEINE DESULFHYDRASE
OS493_005830-T1ATP-DEPENDENT RNA HELICASE DBP3
OS493_005831-T1FOLYLPOLYGLUTAMATE SYNTHASE-RELATED
OS493_005832-T1DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
OS493_005833-T1DYNACTIN SUBUNIT 3
OS493_005834-T1CRYPTOCHROME
OS493_005835-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22
OS493_005836-T1RIBOSOMAL PROTEIN L7AE FAMILY MEMBER
OS493_005837-T1
OS493_005838-T1
OS493_005839-T1
OS493_005840-T1IGF-LIKE FAMILY RECEPTOR 1
OS493_005841-T1
OS493_005842-T1GEM-ASSOCIATED PROTEIN 4
OS493_005843-T1GEM-ASSOCIATED PROTEIN 4
OS493_005844-T1PROTEIN YIPPEE-LIKE CG15309-RELATED
OS493_005845-T1PROTEIN YIPPEE-LIKE CG15309-RELATED
OS493_005846-T1FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS
OS493_005847-T1TRANSMEMBRANE PROTEIN 198 FAMILY MEMBER
OS493_005848-T1
OS493_005849-T1
OS493_005850-T1
OS493_005851-T1
OS493_005852-T1
OS493_005853-T1
OS493_005854-T1TRANSCRIPTION INITIATION FACTOR IIB-RELATED
OS493_005855-T1PROTEIN C10
OS493_005856-T1SOLUTE CARRIER FAMILY 25
OS493_005857-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
OS493_005858-T1TRANSMEMBRANE PROTEIN 163
OS493_005859-T1TRANSMEMBRANE PROTEIN 163
OS493_005860-T1TRANSMEMBRANE PROTEIN 163
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