About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_006070-T1
OS493_006072-T1CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT A CAF-1 SUBUNIT A
OS493_006073-T1DNA-DIRECTED RNA POLYMERASE I,II,III
OS493_006074-T1TROPOMYOSIN
OS493_006075-T1SI:CH211-108C17.2-RELATED-RELATED
OS493_006076-T1
OS493_006077-T1
OS493_006078-T1GI:13385330
OS493_006079-T1GI:13385330
OS493_006080-T1LYR MOTIF-CONTAINING PROTEIN 2
OS493_006081-T1TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED
OS493_006082-T1
OS493_006083-T1
OS493_006084-T1MERLIN/MOESIN/EZRIN/RADIXIN
OS493_006085-T1MERLIN/MOESIN/EZRIN/RADIXIN
OS493_006087-T1PROTEASE M50 MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE 2 PROTEASE
OS493_006088-T1FLAGELLAR RADIAL SPOKE PROTEIN 3
OS493_006089-T1ASHWIN
OS493_006090-T1RIBOSOMAL PROTEIN L13
OS493_006091-T1AMINOTRANSFERASE CLASS V
OS493_006092-T1OLFACTOMEDIN-RELATED
OS493_006094-T1
OS493_006096-T1OLFACTOMEDIN-RELATED
OS493_006098-T1AMINOTRANSFERASE CLASS V
OS493_006101-T1
OS493_006102-T1
OS493_006105-T1OLFACTOMEDIN-RELATED
OS493_006109-T1
OS493_006111-T1
OS493_006112-T1
OS493_006114-T1DNA REPAIR PROTEIN XP-C / RAD4
OS493_006115-T1NEUROLIGIN
OS493_006116-T1CARBOXYLESTERASE
OS493_006117-T1CARBOXYLESTERASE
OS493_006118-T1CARBOXYLESTERASE
OS493_006119-T1NEUROLIGIN
OS493_006120-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_006121-T1PA14 DOMAIN-CONTAINING PROTEIN
OS493_006122-T1MONOCARBOXYLATE TRANSPORTER
OS493_006123-T1MONOCARBOXYLATE TRANSPORTER
OS493_006124-T1MONOCARBOXYLATE TRANSPORTER
OS493_006125-T1MONOCARBOXYLATE TRANSPORTER
OS493_006126-T1MONOCARBOXYLATE TRANSPORTER
OS493_006127-T1
OS493_006128-T1MONOCARBOXYLATE TRANSPORTER
OS493_006129-T1SCP160
OS493_006130-T1SCP160
OS493_006131-T1SERINE-THREONINE PROTEIN KINASE
OS493_006132-T1RHO FAMILY GTPASE
OS493_006133-T126S PROTEASOME REGULATORY SUBUNIT
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