About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_006237-T1
OS493_006238-T1
OS493_006239-T1
OS493_006240-T1LD44762P
OS493_006241-T1LD44762P
OS493_006242-T1LD44762P
OS493_006243-T1LD44762P
OS493_006244-T1
OS493_006245-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_006246-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_006247-T1-
OS493_006248-T1EF-HAND DOMAIN-CONTAINING PROTEIN D
OS493_006249-T1ACID PHOSPHATASE-RELATED
OS493_006250-T1
OS493_006251-T1CALSYNTENIN
OS493_006252-T1CADHERIN-87A
OS493_006253-T1PROTEIN LZIC
OS493_006254-T1TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER
OS493_006255-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_006256-T1GREMLIN 1
OS493_006257-T1
OS493_006258-T1DED DOMAIN-CONTAINING PROTEIN
OS493_006259-T1CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
OS493_006260-T1
OS493_006261-T1PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7
OS493_006262-T1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
OS493_006263-T1
OS493_006264-T1BCAS2 PROTEIN
OS493_006265-T1FOLLISTATIN-RELATED
OS493_006266-T1UNCHARACTERIZED
OS493_006267-T1UNCHARACTERIZED
OS493_006268-T1COLLAGEN ALPHA
OS493_006269-T1UNCHARACTERIZED
OS493_006270-T1UNCHARACTERIZED
OS493_006271-T1UNCHARACTERIZED
OS493_006272-T1UNCHARACTERIZED
OS493_006273-T1UNCHARACTERIZED
OS493_006275-T1UNCHARACTERIZED
OS493_006276-T1FOLLISTATIN-RELATED
OS493_006277-T1FOLLISTATIN-RELATED
OS493_006278-T1FOLLISTATIN-RELATED
OS493_006279-T1FOLLISTATIN-RELATED
OS493_006280-T1PIKACHURIN-LIKE PROTEIN
OS493_006281-T1COLLAGEN ALPHA
OS493_006282-T1RGD1565685 PROTEIN
OS493_006283-T1NB-ARC AND TPR DOMAIN PROTEIN
OS493_006284-T1
OS493_006285-T1TPR REPEAT CONTAINING PROTEIN
OS493_006286-T160S RIBOSOMAL PROTEIN L22
OS493_006287-T1UNCHARACTERIZED
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