About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002507-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_002508-T1TRANSMEMBRANE GTPASE FZO1
OS493_002509-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_002510-T1DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE
OS493_002511-T1TETRASPANIN
OS493_002512-T1-
OS493_002513-T1PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1
OS493_002514-T1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
OS493_002515-T1LON PROTEASE
OS493_002516-T1LON PROTEASE
OS493_002517-T1-
OS493_002518-T1SHC TRANSFORMING PROTEIN
OS493_002519-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_002520-T1BATTENIN
OS493_002521-T1BATTENIN
OS493_002522-T1BATTENIN
OS493_002523-T1GLUCOSE REPRESSIBLE PROTEIN MAK10
OS493_002524-T1SERINE INCORPORATOR
OS493_002525-T1HVA22-LIKE PROTEINS
OS493_002526-T1TB1 PROTEIN-RELATED
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