Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_006288-T1 | CENTAURIN/ARF |
OS493_006289-T1 | |
OS493_006290-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
OS493_006291-T1 | |
OS493_006292-T1 | |
OS493_006293-T1 | DYNAMIN |
OS493_006294-T1 | |
OS493_006295-T1 | CELLULAR TUMOR ANTIGEN P53 |
OS493_006296-T1 | FUKUTIN RELATED PROTEIN |
OS493_006297-T1 | FUKUTIN RELATED PROTEIN |
OS493_006298-T1 | |
OS493_006299-T1 | FUKUTIN RELATED PROTEIN |
OS493_006300-T1 | |
OS493_006301-T1 | |
OS493_006302-T1 | |
OS493_006303-T1 | FORKHEAD BOX PROTEIN |
OS493_006304-T1 | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA |
OS493_006305-T1 | SYNAPTOBREVIN FAMILY MEMBER |
OS493_006306-T1 | PUTATIVE ATP-ASE |
OS493_006307-T1 | |
OS493_006309-T1 | CASEIN KINASE-RELATED |
OS493_006310-T1 | FOLATE RECEPTOR |
OS493_006311-T1 | NOT56 - RELATED |
OS493_006312-T1 | |
OS493_006313-T1 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED |
OS493_006314-T1 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED |
OS493_006315-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 11 |
OS493_006316-T1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 11 |
OS493_006317-T1 | |
OS493_006318-T1 | MULTIPLE PDZ DOMAIN PROTEIN |
OS493_006319-T1 | RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT |
OS493_006320-T1 | C3ORF6 PROTEIN-RELATED |
OS493_006321-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_006322-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_006323-T1 | SOLUTE CARRIER FAMILY 22 MEMBER |
OS493_006324-T1 | CLEAVAGE STIMULATION FACTOR SUBUNIT 1 |
OS493_006325-T1 | CYTOCHROME P450 FAMILY 4 |
OS493_006326-T1 | |
OS493_006327-T1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
OS493_006328-T1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
OS493_006329-T1 | |
OS493_006330-T1 | CYTOCHROME P450 |
OS493_006331-T1 | SECRETED MODULAR CALCIUM-BINDING PROTEIN |
OS493_006332-T1 | |
OS493_006333-T1 | |
OS493_006334-T1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
OS493_006335-T1 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
OS493_006336-T1 | RIBOSOMAL PROTEIN L47, MITOCHONDRIAL-RELATED |
OS493_006337-T1 | |
OS493_006338-T1 |