About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_006449-T1
OS493_006450-T1
OS493_006451-T1
OS493_006452-T1
OS493_006453-T1
OS493_006454-T1
OS493_006455-T1UNCHARACTERIZED
OS493_006456-T1UNCHARACTERIZED
OS493_006457-T1UNCHARACTERIZED
OS493_006458-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
OS493_006459-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
OS493_006460-T1RIBONUCLEASE P SUBUNIT P21
OS493_006461-T1GMP SYNTHASE-RELATED
OS493_006463-T1HERMANSKY-PUDLAK SYNDROME 3 PROTEIN
OS493_006464-T1UREASE ACCESSORY PROTEIN D
OS493_006465-T1UREASE ACCESSORY PROTEIN G
OS493_006466-T1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
OS493_006467-T1UREASE
OS493_006468-T1UREASE ACCESSORY PROTEIN D
OS493_006469-T1
OS493_006470-T1PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
OS493_006471-T180 KDA MCM3-ASSOCIATED PROTEIN
OS493_006472-T1RADIAL SPOKE HEAD 1 HOMOLOG
OS493_006473-T1
OS493_006474-T1
OS493_006475-T1
OS493_006476-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 16
OS493_006477-T1GRB10 INTERACTING GYF PROTEIN
OS493_006478-T1GRB10 INTERACTING GYF PROTEIN
OS493_006480-T1PROTEIN DISPATCHED HOMOLOG 3
OS493_006481-T1PROTEIN DISPATCHED HOMOLOG 3
OS493_006482-T1SODIUM-GLUCOSE COTRANSPORTER REGULATORY PROTEIN -RELATED
OS493_006483-T1BARDET-BIEDL SYNDROME 1 PROTEIN
OS493_006484-T1DNA-DIRECTED RNA POLYMERASE II
OS493_006485-T1
OS493_006486-T1FLAVIN MONOAMINE OXIDASE
OS493_006488-T1METHYLENETETRAHYDROFOLATE REDUCTASE
OS493_006489-T1SCAVENGER RECEPTOR CLASS F
OS493_006490-T1MUCIN-22
OS493_006491-T1PENTRAXIN
OS493_006492-T1ADIPOR/PROGESTIN RECEPTOR-RELATED
OS493_006493-T1ADIPOR/PROGESTIN RECEPTOR-RELATED
OS493_006494-T1COPPER AMINE OXIDASE
OS493_006495-T1COPPER AMINE OXIDASE
OS493_006496-T1
OS493_006497-T1COPPER AMINE OXIDASE
OS493_006498-T1PROTEIN RCC2
OS493_006499-T1ADIPOR/PROGESTIN RECEPTOR-RELATED
OS493_006500-T1FI04643P-RELATED
OS493_006501-T1
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