About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_006391-T1
OS493_006392-T1
OS493_006393-T1
OS493_006394-T1GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE
OS493_006395-T1
OS493_006396-T1CELL DIVISION PROTEIN KINASE
OS493_006397-T1CELL DIVISION PROTEIN KINASE
OS493_006398-T1
OS493_006399-T1
OS493_006401-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
OS493_006402-T1VOLTAGE-GATED POTASSIUM CHANNEL
OS493_006403-T1UNCHARACTERIZED
OS493_006404-T1UNCHARACTERIZED
OS493_006405-T1
OS493_006406-T1UNCHARACTERIZED
OS493_006407-T1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
OS493_006408-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
OS493_006409-T1F20B24.22
OS493_006410-T1
OS493_006411-T1
OS493_006412-T1PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
OS493_006413-T1
OS493_006414-T1
OS493_006415-T1MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER
OS493_006416-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_006417-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_006418-T1CS DOMAIN-CONTAINING PROTEIN
OS493_006419-T1CS DOMAIN-CONTAINING PROTEIN
OS493_006420-T1G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN
OS493_006421-T1BANK1/PIK3AP1 FAMILY MEMBER
OS493_006422-T1
OS493_006423-T1
OS493_006424-T1
OS493_006425-T1
OS493_006426-T1
OS493_006427-T1
OS493_006431-T1
OS493_006432-T1
OS493_006433-T1
OS493_006434-T1
OS493_006435-T1
OS493_006436-T1
OS493_006438-T1
OS493_006440-T1
OS493_006441-T1
OS493_006442-T1
OS493_006443-T1
OS493_006444-T1
OS493_006445-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
OS493_006448-T1
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