About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002771-T1-
OS493_002772-T1HISTONE-LYSINE N-METHYLTRANSFERASE SETD2
OS493_002773-T1-
OS493_002774-T1CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED
OS493_002775-T1SECRETED MODULAR CALCIUM-BINDING PROTEIN
OS493_002776-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 4
OS493_002777-T1LUNG SEVEN TRANSMEMBRANE RECEPTOR
OS493_002778-T1LUNG SEVEN TRANSMEMBRANE RECEPTOR
OS493_002779-T1-
OS493_002780-T1-
OS493_002781-T1-
OS493_002782-T1EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1
OS493_002783-T1CNH DOMAIN CONTAINING
OS493_002784-T1HOMEOBOX PROTEIN NKX
OS493_002785-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_002786-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_002787-T1SYNAPTOSOMAL ASSOCIATED PROTEIN
OS493_002788-T1HOMEO BOX HB9 LIKE A-RELATED
OS493_002789-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 7
OS493_002790-T1UBIQUITIN-CONJUGATING ENZYME E2
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