About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_007325-T1PHOSPHATIDYLSERINE DECARBOXYLASE
OS493_007326-T1PHOSPHATIDYLSERINE DECARBOXYLASE
OS493_007327-T1
OS493_007328-T1PHOSPHATIDYLSERINE DECARBOXYLASE
OS493_007329-T1
OS493_007330-T1
OS493_007331-T1RUBY-EYE2-LIKE PROTEIN
OS493_007332-T1
OS493_007334-T1
OS493_007335-T1RUBY-EYE2-LIKE PROTEIN
OS493_007336-T1DNA-DIRECTED RNA POLYMERASE
OS493_007337-T1LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
OS493_007338-T1LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD
OS493_007339-T1SI:CH211-266K2.1
OS493_007341-T1
OS493_007342-T1
OS493_007343-T1
OS493_007344-T1CYTOKINE RECEPTOR
OS493_007345-T1COLLAGEN
OS493_007346-T1
OS493_007347-T1
OS493_007348-T1SI:CH211-266K2.1
OS493_007349-T1MONOCARBOXYLATE TRANSPORTER
OS493_007350-T1
OS493_007352-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_007353-T1OVOCHYMASE-RELATED
OS493_007354-T1CYTOKINE RECEPTOR
OS493_007355-T1OVOCHYMASE-RELATED
OS493_007356-T1OVOCHYMASE-RELATED
OS493_007357-T1MUCIN 4-RELATED
OS493_007358-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_007359-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
OS493_007360-T1BONUS, ISOFORM C-RELATED
OS493_007361-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
OS493_007362-T1INTELECTIN
OS493_007363-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_007364-T1EXPANSIN-LIKE PROTEIN 2
OS493_007365-T1OPSIN
OS493_007366-T1OPSIN
OS493_007367-T1
OS493_007368-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
OS493_007369-T1
OS493_007370-T1
OS493_007373-T1
OS493_007375-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
OS493_007376-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
OS493_007377-T1UNCHARACTERIZED
OS493_007378-T1UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
OS493_007379-T1
OS493_007380-T1
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