About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002960-T1ADP RIBOSYLATION FACTOR-RELATED
OS493_002961-T1PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE
OS493_002962-T1COENZYME Q10 BIOSYNTHESIS PROTEIN 7
OS493_002963-T1-
OS493_002964-T1CENTROMERE PROTEIN X
OS493_002965-T1ZINC FINGER PROTEIN 207
OS493_002966-T1CGTHBA PROTEIN -14 GENE PROTEIN
OS493_002967-T1-
OS493_002968-T1-
OS493_002969-T1-
OS493_002970-T1E3 UBIQUITIN-PROTEIN LIGASE CHIP
OS493_002971-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_002972-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_002973-T1G-PROTEIN COUPLED RECEPTOR
OS493_002974-T1CENTROCORTIN FAMILY MEMBER
OS493_002975-T1CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
OS493_002976-T139S RIBOSOMAL PROTEIN L12
OS493_002977-T1UPF0472 PROTEIN C16ORF72
OS493_002978-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_002979-T1ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
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