About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_002939-T1TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
OS493_002940-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_002941-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_002942-T1NOTCH LIGAND FAMILY MEMBER
OS493_002943-T1PROTEIN HID1
OS493_002944-T1TANDEM PH DOMAIN CONTAINING PROTEIN
OS493_002946-T1ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
OS493_002947-T1-
OS493_002948-T1THO COMPLEX SUBUNIT 6 HOMOLOG
OS493_002949-T1POLYCYSTIN FAMILY MEMBER
OS493_002950-T1POLYCYSTIN FAMILY MEMBER
OS493_002951-T1POLYCYSTIN-1
OS493_002952-T1-
OS493_002953-T1DIACYLGLYCEROL LIPASE HOMOLOG-RELATED
OS493_002954-T1-
OS493_002955-T1DIACYLGLYCEROL LIPASE HOMOLOG-RELATED
OS493_002956-T1DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED
OS493_002957-T1SPERIOLIN-BINDING FACTOR
OS493_002958-T1SPERIOLIN-BINDING FACTOR
OS493_002959-T1SPERIOLIN-BINDING FACTOR
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