About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_003064-T1BETA-TUBULIN COFACTOR D
OS493_003065-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_003067-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_003068-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_003069-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_003070-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_003071-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_003073-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_003076-T1-
OS493_003077-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_003078-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_003079-T1G-PROTEIN COUPLED RECEPTOR
OS493_003080-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_003081-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_003082-T1CARDIOLIPIN HYDROLASE
OS493_003083-T1ET TRANSLATION PRODUCT-RELATED
OS493_003084-T1ET TRANSLATION PRODUCT-RELATED
OS493_003087-T1BRAIN PROTEIN I3
OS493_003088-T1-
OS493_003089-T1-
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