About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_007821-T1
OS493_007822-T1
OS493_007823-T1
OS493_007824-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
OS493_007825-T1DNAJ HOMOLOG SUBFAMILY C MEMBER 1
OS493_007826-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_007827-T1HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED
OS493_007828-T1PHD FINGER PROTEINS
OS493_007829-T1
OS493_007830-T1CALCIUM BINDING PROTEINS
OS493_007831-T1SI:CH73-250A16.5-RELATED
OS493_007832-T1N-MYRISTOYL TRANSFERASE
OS493_007833-T1N-MYRISTOYL TRANSFERASE
OS493_007834-T1BATTENIN
OS493_007835-T1
OS493_007836-T1BATTENIN
OS493_007837-T1BATTENIN
OS493_007838-T1
OS493_007839-T1
OS493_007840-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_007841-T1APOLIPOPROTEIN L
OS493_007842-T1
OS493_007843-T1APOLIPOPROTEIN L
OS493_007844-T1CHITIN BINDING PERITROPHIN-A
OS493_007845-T1
OS493_007846-T1
OS493_007847-T1
OS493_007848-T1IG-LIKE DOMAIN-CONTAINING PROTEIN
OS493_007849-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
OS493_007850-T1USP DOMAIN-CONTAINING PROTEIN
OS493_007851-T1
OS493_007852-T1SWI/SNF COMPLEX-RELATED
OS493_007853-T1
OS493_007854-T1
OS493_007855-T1CONDENSIN-2 COMPLEX SUBUNIT G2
OS493_007856-T1CONDENSIN-2 COMPLEX SUBUNIT G2
OS493_007857-T1CONDENSIN-2 COMPLEX SUBUNIT G2
OS493_007858-T1HEME-BINDING PROTEIN-RELATED
OS493_007860-T1
OS493_007861-T1DUF614 FAMILY PROTEIN-RELATED
OS493_007862-T1
OS493_007863-T1CHROMOSOME 7, WHOLE GENOME SHOTGUN SEQUENCE
OS493_007864-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
OS493_007865-T1
OS493_007866-T1
OS493_007867-T1PROPERDIN
OS493_007868-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_007869-T1
OS493_007870-T1AGGRECAN/VERSICAN PROTEOGLYCAN
OS493_007871-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
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