Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_007872-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_007873-T1 | |
OS493_007874-T1 | GM2 GANGLIOSIDE ACTIVATOR PROTEIN |
OS493_007875-T1 | HEME-BINDING PROTEIN-RELATED |
OS493_007876-T1 | GH02722P |
OS493_007878-T1 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
OS493_007879-T1 | |
OS493_007880-T1 | SOLUTE CARRIER FAMILY 25 |
OS493_007881-T1 | EPOXIDE HYDROLASE 1-RELATED |
OS493_007882-T1 | |
OS493_007883-T1 | S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED |
OS493_007884-T1 | UNCHARACTERIZED |
OS493_007885-T1 | ARSENITE-RESISTANCE PROTEIN 2 |
OS493_007886-T1 | ARSENITE-RESISTANCE PROTEIN 2 |
OS493_007887-T1 | ARSENITE-RESISTANCE PROTEIN 2 |
OS493_007888-T1 | PR DOMAIN ZINC FINGER PROTEIN |
OS493_007889-T1 | SPECKLE-TYPE POZ PROTEIN |
OS493_007890-T1 | PR DOMAIN ZINC FINGER PROTEIN |
OS493_007891-T1 | ALCOHOL DEHYDROGENASE |
OS493_007892-T1 | |
OS493_007893-T1 | METHIONINE AMINOPEPTIDASE |
OS493_007894-T1 | |
OS493_007895-T1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
OS493_007896-T1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
OS493_007897-T1 | |
OS493_007898-T1 | INOSITOL POLYPHOSPHATE KINASE |
OS493_007899-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
OS493_007900-T1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
OS493_007901-T1 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
OS493_007902-T1 | ANOSMIN |
OS493_007903-T1 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
OS493_007904-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_007905-T1 | ZGC:136858 |
OS493_007906-T1 | 60S ACIDIC RIBOSOMAL PROTEIN P0 |
OS493_007907-T1 | UNCHARACTERIZED |
OS493_007908-T1 | UNCHARACTERIZED |
OS493_007909-T1 | |
OS493_007910-T1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 |
OS493_007912-T1 | |
OS493_007913-T1 | CRUMBS FAMILY MEMBER |
OS493_007914-T1 | CRUMBS FAMILY MEMBER |
OS493_007915-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
OS493_007916-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_007918-T1 | NOTCH LIGAND FAMILY MEMBER |
OS493_007919-T1 | NOTCH LIGAND FAMILY MEMBER |
OS493_007920-T1 | CRUMBS FAMILY MEMBER |
OS493_007921-T1 | |
OS493_007922-T1 | |
OS493_007923-T1 | NOTCH LIGAND FAMILY MEMBER |
OS493_007924-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |