About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_007872-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_007873-T1
OS493_007874-T1GM2 GANGLIOSIDE ACTIVATOR PROTEIN
OS493_007875-T1HEME-BINDING PROTEIN-RELATED
OS493_007876-T1GH02722P
OS493_007878-T1FCH AND DOUBLE SH3 DOMAINS PROTEIN
OS493_007879-T1
OS493_007880-T1SOLUTE CARRIER FAMILY 25
OS493_007881-T1EPOXIDE HYDROLASE 1-RELATED
OS493_007882-T1
OS493_007883-T1S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED
OS493_007884-T1UNCHARACTERIZED
OS493_007885-T1ARSENITE-RESISTANCE PROTEIN 2
OS493_007886-T1ARSENITE-RESISTANCE PROTEIN 2
OS493_007887-T1ARSENITE-RESISTANCE PROTEIN 2
OS493_007888-T1PR DOMAIN ZINC FINGER PROTEIN
OS493_007889-T1SPECKLE-TYPE POZ PROTEIN
OS493_007890-T1PR DOMAIN ZINC FINGER PROTEIN
OS493_007891-T1ALCOHOL DEHYDROGENASE
OS493_007892-T1
OS493_007893-T1METHIONINE AMINOPEPTIDASE
OS493_007894-T1
OS493_007895-T1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
OS493_007896-T1GUANYL-NUCLEOTIDE EXCHANGE FACTOR
OS493_007897-T1
OS493_007898-T1INOSITOL POLYPHOSPHATE KINASE
OS493_007899-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
OS493_007900-T1ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
OS493_007901-T1ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
OS493_007902-T1ANOSMIN
OS493_007903-T1N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
OS493_007904-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_007905-T1ZGC:136858
OS493_007906-T160S ACIDIC RIBOSOMAL PROTEIN P0
OS493_007907-T1UNCHARACTERIZED
OS493_007908-T1UNCHARACTERIZED
OS493_007909-T1
OS493_007910-T1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34
OS493_007912-T1
OS493_007913-T1CRUMBS FAMILY MEMBER
OS493_007914-T1CRUMBS FAMILY MEMBER
OS493_007915-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
OS493_007916-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_007918-T1NOTCH LIGAND FAMILY MEMBER
OS493_007919-T1NOTCH LIGAND FAMILY MEMBER
OS493_007920-T1CRUMBS FAMILY MEMBER
OS493_007921-T1
OS493_007922-T1
OS493_007923-T1NOTCH LIGAND FAMILY MEMBER
OS493_007924-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
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