About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_007978-T1AVIDIN-RELATED
OS493_007979-T1LOC100145250 PROTEIN
OS493_007980-T1UNCHARACTERIZED
OS493_007981-T1
OS493_007982-T1
OS493_007983-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_007984-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_007985-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_007986-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_007987-T1ORGANIC ANION TRANSPORTER
OS493_007988-T11-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED
OS493_007989-T11-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED
OS493_007990-T1COLLAGEN ALPHA
OS493_007991-T1RETINOL DEHYDROGENASE-RELATED
OS493_007992-T1RETINOL DEHYDROGENASE-RELATED
OS493_007993-T1
OS493_007994-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_007995-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_007996-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_007997-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_007998-T1
OS493_007999-T1FLAP ENDONUCLEASE FAMILY MEMBER
OS493_008000-T1
OS493_008001-T1
OS493_008002-T1
OS493_008003-T1
OS493_008004-T1
OS493_008005-T1AGAP005574-PA
OS493_008006-T1
OS493_008007-T1
OS493_008008-T1
OS493_008009-T1
OS493_008010-T1
OS493_008011-T1
OS493_008012-T1
OS493_008013-T1
OS493_008014-T1
OS493_008015-T1
OS493_008016-T1
OS493_008017-T1
OS493_008018-T1
OS493_008019-T1
OS493_008020-T1
OS493_008021-T1
OS493_008022-T1
OS493_008023-T1
OS493_008024-T1
OS493_008025-T1
OS493_008026-T1
OS493_008027-T1
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