About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_008137-T1FIBROBLAST GROWTH FACTOR
OS493_008138-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_008139-T1
OS493_008140-T1FI04643P-RELATED
OS493_008141-T1
OS493_008142-T1SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
OS493_008143-T1
OS493_008144-T1FI04643P-RELATED
OS493_008145-T1
OS493_008147-T1SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
OS493_008148-T1FI04643P-RELATED
OS493_008149-T1SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING
OS493_008152-T1FI04643P-RELATED
OS493_008153-T1
OS493_008154-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
OS493_008155-T1
OS493_008156-T1
OS493_008157-T1
OS493_008158-T1
OS493_008159-T1EXPRESSED PROTEIN
OS493_008160-T1
OS493_008161-T1RIBOPHORIN I
OS493_008162-T1
OS493_008163-T1
OS493_008164-T1RAD54-LIKE
OS493_008165-T1RAD54-LIKE
OS493_008166-T1RAD54-LIKE
OS493_008167-T1GOLGI MEMBRANE PROTEIN YIP1
OS493_008168-T1COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER
OS493_008169-T1KINESIN-RELATED
OS493_008170-T1SERINE-THREONINE PROTEIN KINASE
OS493_008171-T1TESTIS EXPRESSED GENE 14
OS493_008172-T1
OS493_008173-T1
OS493_008174-T1POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED
OS493_008175-T1POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED
OS493_008176-T1POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED
OS493_008177-T1POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED
OS493_008178-T1
OS493_008180-T1
OS493_008181-T1POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED
OS493_008182-T1POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED
OS493_008183-T1PERICENTRIOLAR MATERIAL 1-RELATED
OS493_008184-T1TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2
OS493_008185-T1TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2
OS493_008186-T1SOX TRANSCRIPTION FACTOR
OS493_008187-T1FIBRILLIN-RELATED
OS493_008188-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_008189-T1NUCLEOLAR PROTEIN 8
OS493_008190-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
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