Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_008346-T1 | FGF RECEPTOR ACTIVATING PROTEIN 1 |
OS493_008347-T1 | |
OS493_008348-T1 | FGF RECEPTOR ACTIVATING PROTEIN 1 |
OS493_008349-T1 | WD REPEAT-CONTAINING PROTEIN 55 |
OS493_008350-T1 | |
OS493_008351-T1 | |
OS493_008352-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_008353-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_008354-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_008356-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_008358-T1 | |
OS493_008359-T1 | THROMBOSPONDIN TYPE I DOMAIN-CONTAINING 1 |
OS493_008360-T1 | WD40 REPEAT DOMAIN 95 |
OS493_008361-T1 | WD40 REPEAT DOMAIN 95 |
OS493_008362-T1 | ELKS/RAB6-INTERACTING/CAST PROTEIN |
OS493_008363-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
OS493_008364-T1 | WNT RELATED |
OS493_008365-T1 | |
OS493_008366-T1 | WNT RELATED |
OS493_008367-T1 | |
OS493_008368-T1 | |
OS493_008369-T1 | |
OS493_008370-T1 | |
OS493_008371-T1 | |
OS493_008372-T1 | |
OS493_008373-T1 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
OS493_008374-T1 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
OS493_008375-T1 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
OS493_008376-T1 | |
OS493_008377-T1 | PHOSPHATASE WITH HOMOLOGY TO TENSIN |
OS493_008378-T1 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
OS493_008379-T1 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
OS493_008380-T1 | PLATELET-DERIVED GROWTH FACTOR |
OS493_008381-T1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED |
OS493_008382-T1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED |
OS493_008383-T1 | |
OS493_008384-T1 | DOLICHYL GLYCOSYLTRANSFERASE |
OS493_008385-T1 | DOLICHYL GLYCOSYLTRANSFERASE |
OS493_008386-T1 | DOLICHYL GLYCOSYLTRANSFERASE |
OS493_008387-T1 | RING FINGER PROTEIN 219 |
OS493_008388-T1 | |
OS493_008389-T1 | POU DOMAIN |
OS493_008390-T1 | |
OS493_008391-T1 | C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 180 |
OS493_008392-T1 | MACPF DOMAIN-CONTAINING PROTEIN |
OS493_008393-T1 | |
OS493_008394-T1 | |
OS493_008395-T1 | |
OS493_008396-T1 | |
OS493_008398-T1 |