Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_007659-T1 | |
OS493_007660-T1 | |
OS493_007661-T1 | ARGININE OR CREATINE KINASE |
OS493_007663-T1 | |
OS493_007664-T1 | |
OS493_007665-T1 | |
OS493_007666-T1 | |
OS493_007667-T1 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN |
OS493_007669-T1 | |
OS493_007670-T1 | MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN |
OS493_007671-T1 | AUGMIN SUBUNIT 4 FAMILY MEMBER |
OS493_007672-T1 | ALCOHOL O-ACETYLTRANSFERASE 1-RELATED |
OS493_007673-T1 | ALCOHOL O-ACETYLTRANSFERASE 1-RELATED |
OS493_007674-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_007675-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_007676-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_007677-T1 | TBC1 DOMAIN FAMILY MEMBER 20/GTPASE |
OS493_007678-T1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
OS493_007679-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_007680-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_007681-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_007682-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_007683-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_007685-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_007686-T1 | CDC68 RELATED |
OS493_007687-T1 | CDC68 RELATED |
OS493_007688-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_007689-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_007690-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_007691-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_007692-T1 | |
OS493_007693-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_007694-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_007695-T1 | |
OS493_007696-T1 | TAX1 BINDING PROTEIN-RELATED |
OS493_007697-T1 | TAX1 BINDING PROTEIN-RELATED |
OS493_007698-T1 | TAX1 BINDING PROTEIN-RELATED |
OS493_007699-T1 | |
OS493_007700-T1 | EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN |
OS493_007701-T1 | CALCIUM BINDING PROTEIN |
OS493_007702-T1 | TRANSPORT PROTEIN TRAPP |
OS493_007703-T1 | TRANSPORT PROTEIN TRAPP |
OS493_007704-T1 | |
OS493_007705-T1 | |
OS493_007706-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_007707-T1 | |
OS493_007708-T1 | |
OS493_007709-T1 | |
OS493_007711-T1 | OPSIN |
OS493_007712-T1 | MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN |