Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_008670-T1 | LYMPHOCYTE EXPANSION MOLECULE |
OS493_008671-T1 | |
OS493_008672-T1 | |
OS493_008673-T1 | |
OS493_008674-T1 | HEMK METHYLTRANSFERASE |
OS493_008675-T1 | HEMK METHYLTRANSFERASE |
OS493_008676-T1 | HEMK METHYLTRANSFERASE |
OS493_008677-T1 | HEMK METHYLTRANSFERASE |
OS493_008678-T1 | OS02G0202900 PROTEIN |
OS493_008679-T1 | UPF0600 PROTEIN C5ORF51 |
OS493_008680-T1 | CALCIUM HOMEOSTASIS MODULATOR PROTEIN |
OS493_008681-T1 | CALCIUM HOMEOSTASIS MODULATOR PROTEIN |
OS493_008682-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
OS493_008683-T1 | COLLAGEN ALPHA |
OS493_008685-T1 | |
OS493_008686-T1 | DYSFERLIN-RELATED |
OS493_008687-T1 | COLLAGEN ALPHA |
OS493_008688-T1 | COLLAGEN ALPHA |
OS493_008689-T1 | MALE FERTILITY FACTOR KL5 |
OS493_008690-T1 | MALE FERTILITY FACTOR KL5 |
OS493_008691-T1 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
OS493_008692-T1 | DYNEIN HEAVY CHAIN |
OS493_008693-T1 | DYNEIN HEAVY CHAIN |
OS493_008694-T1 | MATRIN 3/NUCLEAR PROTEIN 220-RELATED |
OS493_008695-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_008696-T1 | |
OS493_008697-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_008698-T1 | |
OS493_008699-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_008705-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_008706-T1 | G-PROTEIN COUPLED RECEPTOR |
OS493_008708-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_008709-T1 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |
OS493_008711-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_008712-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_008713-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_008714-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_008715-T1 | NUCLEAR HORMONE RECEPTOR |
OS493_008716-T1 | NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B |
OS493_008717-T1 | |
OS493_008719-T1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 |
OS493_008720-T1 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
OS493_008722-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_008723-T1 | |
OS493_008725-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_008726-T1 | ATP-DEPENDENT RNA AND DNA HELICASE |
OS493_008727-T1 | |
OS493_008728-T1 | ATP-DEPENDENT RNA AND DNA HELICASE |
OS493_008729-T1 | RFX TRANSCRIPTION FACTOR FAMILY |
OS493_008730-T1 |