About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_009264-T1
OS493_009265-T1
OS493_009266-T1
OS493_009267-T1TUBULIN
OS493_009268-T1TUBULIN
OS493_009269-T1TUBULIN
OS493_009270-T1TUBULIN
OS493_009271-T1TUBULIN
OS493_009272-T1TUBULIN
OS493_009273-T1GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
OS493_009274-T1GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE
OS493_009275-T1METAXIN RELATED
OS493_009276-T1
OS493_009277-T1
OS493_009278-T1ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL
OS493_009279-T1ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL
OS493_009280-T1CARBAMOYLTRANSFERASE FAMILY MEMBER
OS493_009281-T1CARBAMOYLTRANSFERASE FAMILY MEMBER
OS493_009282-T1CARBAMOYLTRANSFERASE FAMILY MEMBER
OS493_009283-T1CARBAMOYLTRANSFERASE FAMILY MEMBER
OS493_009284-T1MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED
OS493_009286-T1
OS493_009287-T1
OS493_009288-T1ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
OS493_009289-T1ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
OS493_009290-T1ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
OS493_009291-T1PROTEIN NIRF
OS493_009292-T1
OS493_009293-T1GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
OS493_009294-T1
OS493_009295-T1
OS493_009296-T1
OS493_009297-T1RIBOSOMAL RNA METHYLTRANSFERASE
OS493_009298-T1EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED
OS493_009299-T1EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED
OS493_009300-T1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
OS493_009301-T1NACHT, LRR AND CARD DOMAINS-CONTAINING
OS493_009302-T1
OS493_009303-T1COMPLEMENT COMPONENT C6
OS493_009304-T1
OS493_009305-T1
OS493_009306-T1
OS493_009307-T1
OS493_009308-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE
OS493_009309-T1PROTEASE M14 CARBOXYPEPTIDASE
OS493_009310-T1
OS493_009311-T12-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
OS493_009312-T12-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
OS493_009313-T1WD REPEAT-CONTAINING PROTEIN POP1
OS493_009314-T1MITOGEN-ACTIVATED PROTEIN KINASE
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