About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_009418-T1D-AMINO ACID OXIDASE
OS493_009419-T1
OS493_009420-T1UNCHARACTERIZED
OS493_009421-T1
OS493_009422-T1
OS493_009423-T1
OS493_009425-T1
OS493_009426-T1
OS493_009427-T1ANKYRIN REPEAT CONTAINING
OS493_009428-T1
OS493_009429-T1POTE ANKYRIN DOMAIN
OS493_009430-T1HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE
OS493_009431-T1CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
OS493_009432-T1RIBONUCLEOPROTEIN RB97D
OS493_009433-T1C3H1-TYPE DOMAIN-CONTAINING PROTEIN-RELATED
OS493_009434-T1MYOTONIC DYSTROPHY S/T KINASE-RELATED
OS493_009435-T1MYOTONIC DYSTROPHY S/T KINASE-RELATED
OS493_009436-T1MYOTONIC DYSTROPHY S/T KINASE-RELATED
OS493_009437-T1
OS493_009438-T1
OS493_009440-T1
OS493_009441-T1
OS493_009445-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_009447-T1
OS493_009448-T1
OS493_009449-T1
OS493_009450-T1MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS
OS493_009451-T1MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS
OS493_009452-T1G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
OS493_009453-T1VIRGINIAMYCIN B LYASE
OS493_009454-T1
OS493_009455-T1
OS493_009456-T1CONTACTIN 5
OS493_009457-T1UNCHARACTERIZED
OS493_009458-T1
OS493_009459-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_009460-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_009461-T1XANTHINE DEHYDROGENASE
OS493_009462-T1S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
OS493_009463-T17,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE
OS493_009464-T1P-LOOP CONTAINING NUCLEOTIDE TRIPHOSPHATE HYDROLASE
OS493_009465-T1S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
OS493_009466-T1D-AMINO ACID OXIDASE
OS493_009467-T1
OS493_009468-T1REGULATOR OF G-PROTEIN SIGNALING 22
OS493_009469-T1REGULATOR OF G-PROTEIN SIGNALING 22
OS493_009470-T1ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL
OS493_009471-T1GLR0591 PROTEIN
OS493_009472-T1
OS493_009473-T1
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