Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_009315-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TRANSPORTER |
OS493_009316-T1 | MALATE AND LACTATE DEHYDROGENASE |
OS493_009317-T1 | SERINE/THREONINE/TYROSINE-INTERACTING-LIKE PROTEIN 1 |
OS493_009318-T1 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
OS493_009319-T1 | TNF RECEPTOR ASSOCIATED FACTOR |
OS493_009320-T1 | |
OS493_009321-T1 | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED |
OS493_009322-T1 | EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED |
OS493_009323-T1 | |
OS493_009324-T1 | |
OS493_009325-T1 | |
OS493_009326-T1 | |
OS493_009327-T1 | |
OS493_009328-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_009329-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_009330-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_009331-T1 | XK-RELATED PROTEIN |
OS493_009332-T1 | PLATELET-DERIVED GROWTH FACTOR |
OS493_009333-T1 | |
OS493_009334-T1 | |
OS493_009335-T1 | |
OS493_009336-T1 | PLATELET-DERIVED GROWTH FACTOR |
OS493_009337-T1 | |
OS493_009338-T1 | PLATELET-DERIVED GROWTH FACTOR |
OS493_009339-T1 | |
OS493_009341-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13 |
OS493_009342-T1 | G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP |
OS493_009343-T1 | G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP |
OS493_009344-T1 | RING FINGER PROTEIN-RELATED |
OS493_009345-T1 | RING FINGER PROTEIN-RELATED |
OS493_009346-T1 | RING FINGER PROTEIN-RELATED |
OS493_009347-T1 | SERINE / THREONINE RACEMASE FAMILY MEMBER |
OS493_009348-T1 | NUCLEAR SPECKLE SPLICING REGULATORY PROTEIN 1 |
OS493_009349-T1 | NUCLEAR SPECKLE SPLICING REGULATORY PROTEIN 1 |
OS493_009350-T1 | FLOTILLIN-RELATED |
OS493_009351-T1 | |
OS493_009352-T1 | |
OS493_009353-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_009354-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_009355-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_009356-T1 | OPSIN |
OS493_009357-T1 | OPSIN |
OS493_009358-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_009359-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I |
OS493_009361-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_009362-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
OS493_009363-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_009364-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_009365-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_009366-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |