About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_009315-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TRANSPORTER
OS493_009316-T1MALATE AND LACTATE DEHYDROGENASE
OS493_009317-T1SERINE/THREONINE/TYROSINE-INTERACTING-LIKE PROTEIN 1
OS493_009318-T1NACHT, LRR AND CARD DOMAINS-CONTAINING
OS493_009319-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_009320-T1
OS493_009321-T1EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED
OS493_009322-T1EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED
OS493_009323-T1
OS493_009324-T1
OS493_009325-T1
OS493_009326-T1
OS493_009327-T1
OS493_009328-T1POLYCYSTIN FAMILY MEMBER
OS493_009329-T1POLYCYSTIN FAMILY MEMBER
OS493_009330-T1POLYCYSTIN FAMILY MEMBER
OS493_009331-T1XK-RELATED PROTEIN
OS493_009332-T1PLATELET-DERIVED GROWTH FACTOR
OS493_009333-T1
OS493_009334-T1
OS493_009335-T1
OS493_009336-T1PLATELET-DERIVED GROWTH FACTOR
OS493_009337-T1
OS493_009338-T1PLATELET-DERIVED GROWTH FACTOR
OS493_009339-T1
OS493_009341-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13
OS493_009342-T1G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP
OS493_009343-T1G PROTEIN-COUPLED RECEPTOR KINASE INTERACTING ARFGAP
OS493_009344-T1RING FINGER PROTEIN-RELATED
OS493_009345-T1RING FINGER PROTEIN-RELATED
OS493_009346-T1RING FINGER PROTEIN-RELATED
OS493_009347-T1SERINE / THREONINE RACEMASE FAMILY MEMBER
OS493_009348-T1NUCLEAR SPECKLE SPLICING REGULATORY PROTEIN 1
OS493_009349-T1NUCLEAR SPECKLE SPLICING REGULATORY PROTEIN 1
OS493_009350-T1FLOTILLIN-RELATED
OS493_009351-T1
OS493_009352-T1
OS493_009353-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_009354-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_009355-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_009356-T1OPSIN
OS493_009357-T1OPSIN
OS493_009358-T1LEUCOKININ RECEPTOR-RELATED
OS493_009359-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I
OS493_009361-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_009362-T1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
OS493_009363-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_009364-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_009365-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_009366-T1TYROSINE-PROTEIN KINASE RECEPTOR
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