Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_009367-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_009368-T1 | |
OS493_009369-T1 | |
OS493_009370-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_009371-T1 | |
OS493_009372-T1 | SH3 MULTIPLE DOMAIN |
OS493_009373-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
OS493_009374-T1 | M-PHASE PHOSPHOPROTEIN 9 |
OS493_009375-T1 | |
OS493_009376-T1 | PROBABLE PEPTIDE CHAIN RELEASE FACTOR C12ORF65 |
OS493_009377-T1 | DELETED IN ORAL CANCER 1/CDK2-ASSOCIATED PROTEIN 1 |
OS493_009378-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 189 |
OS493_009379-T1 | |
OS493_009380-T1 | UBIQUITIN-PROTEIN LIGASE E3C |
OS493_009381-T1 | POLYCOMB GROUP PROTEIN |
OS493_009382-T1 | |
OS493_009383-T1 | GTPASE, IMAP FAMILY MEMBER-RELATED |
OS493_009384-T1 | |
OS493_009386-T1 | GTPASE, IMAP FAMILY MEMBER-RELATED |
OS493_009387-T1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
OS493_009388-T1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
OS493_009389-T1 | G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE |
OS493_009390-T1 | |
OS493_009391-T1 | BEN DOMAIN-CONTAINING PROTEIN 3 |
OS493_009392-T1 | UNCHARACTERIZED |
OS493_009393-T1 | COILIN |
OS493_009394-T1 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
OS493_009395-T1 | NA+/CA2+ K+ INDEPENDENT EXCHANGER |
OS493_009396-T1 | |
OS493_009397-T1 | UNCHARACTERIZED |
OS493_009398-T1 | |
OS493_009399-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_009400-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
OS493_009401-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
OS493_009402-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 189 |
OS493_009403-T1 | |
OS493_009404-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
OS493_009405-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
OS493_009406-T1 | |
OS493_009407-T1 | |
OS493_009408-T1 | PHOSPHOLIPASE B-RELATED |
OS493_009409-T1 | PHOSPHOLIPASE B-RELATED |
OS493_009410-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
OS493_009411-T1 | |
OS493_009412-T1 | |
OS493_009413-T1 | PIRNA BIOGENESIS PROTEIN EXD1 |
OS493_009414-T1 | UNCHARACTERIZED |
OS493_009415-T1 | UNCHARACTERIZED |
OS493_009416-T1 | UNCHARACTERIZED |
OS493_009417-T1 | KINESIN-RELATED |